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R

randomColor() - Static method in class org.coolmap.core.util.graphics.UI
 
randomHSBColorLight() - Static method in class org.coolmap.core.util.graphics.UI
 
randomID() - Static method in class org.coolmap.core.util.Tools
 
RangeComparator - Class in org.coolmap.core.util
all ranges here must all be closed - open type
RangeComparator() - Constructor for class org.coolmap.core.util.RangeComparator
 
rangeDivide(Integer, Integer, Integer) - Static method in class org.coolmap.core.util.MatrixUtils
 
rawCopy(String, String) - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl
Copy an ontology with only the parent-child relationships and the attribute information without depth
recomputeLayout(int) - Method in class org.coolmap.core.util.network.LNetwork
 
redo() - Method in class org.coolmap.core.application.state.StateQueue
 
redo(CoolMapObject) - Static method in class org.coolmap.core.application.state.StateStorageMaster
 
RedoAction - Class in org.coolmap.core.application.state
 
RedoAction() - Constructor for class org.coolmap.core.application.state.RedoAction
 
redrawCanvas() - Method in class org.coolmap.core.canvas.CoolMapView
repaint the entire canvas area
refresh() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
need to be called if ontologies were changed since
registerAggregator(String) - Method in class org.coolmap.core.application.widget.impl.WidgetAggregator
 
registerViewRenderer(Class) - Method in class org.coolmap.core.application.widget.impl.WidgetViewRenderer
 
removeActiveColNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
 
removeActiveColNodes() - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
 
removeActiveRowNodes() - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
 
removeActiveRowNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
This is dangerous...
removeAll() - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl
 
removeAnnotation(VNode, VNode) - Method in class org.coolmap.core.data.annotation.AnnotationStorage
 
removeBaseCMatrix(CoolMapMatrix<BASE>) - Method in class org.coolmap.core.data.CoolMapObject
 
removeChildCoolMapObject(CoolMapObject) - Method in class org.coolmap.core.data.CoolMapObject
 
removeChildNode(VNode) - Method in class org.coolmap.core.data.cmatrixview.model.VNode
 
removeCMatrices(List<CoolMapMatrix<BASE>>) - Method in class org.coolmap.core.data.CoolMapObject
 
removeCObjectListener(CObjectListener) - Method in class org.coolmap.core.data.CoolMapObject
 
removeColumnMap(SideMap) - Method in class org.coolmap.core.canvas.CoolMapView
 
removeCViewListener(CViewListener) - Method in class org.coolmap.core.canvas.CoolMapView
 
removeDataPropertyTable(DataPropertyTable) - Static method in class org.coolmap.core.application.CoolMapMaster
 
removeFileExtension(String) - Static method in class org.coolmap.core.util.Tools
 
removeFilter(ViewFilter) - Method in class org.coolmap.core.util.filter.impl.CombinationFilter
 
removeFromSelected(VNode) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
removeFromSelected(VNode) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
removeFromSelected(T) - Method in interface org.coolmap.core.canvas.ui.sidemaps.Selectable
 
removeHeaderRelatedUIs() - Method in class org.coolmap.core.application.ui.util.DelimitedFilePreviewPanel
 
removeOnology(CoolMapOntologyImpl) - Static method in class org.coolmap.core.application.CoolMapMaster
 
removeOntology() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
removeOntology() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
removeOntology() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
 
removeRowMap(SideMap) - Method in class org.coolmap.core.canvas.CoolMapView
 
removeSideMap(SideMap) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
 
removeViewNodesColumn(Collection<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
only removes nodes without a parent.
removeViewNodesRow(Collection<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
remove nodes from row.
RenameActiveCoolMapObjectAction - Class in org.coolmap.core.data.action
 
RenameActiveCoolMapObjectAction() - Constructor for class org.coolmap.core.data.action.RenameActiveCoolMapObjectAction
 
renameCMatrix(String, String) - Static method in class org.coolmap.core.application.CoolMapMaster
 
renameCOntology(String, String) - Static method in class org.coolmap.core.application.CoolMapMaster
 
RenameCoolMapObjectAction - Class in org.coolmap.core.data.action
 
RenameCoolMapObjectAction(String, CoolMapObject) - Constructor for class org.coolmap.core.data.action.RenameCoolMapObjectAction
 
render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.ColumnMap
render the map whenever needed actually, it's better to separate the render by column.
render(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
render(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.RowMap
 
render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap
 
render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.viewmaps.CoolMapLayer
 
render(Graphics2D, CoolMapObject<Object, Object>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.viewmaps.FilterLayer
 
render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.viewmaps.MapLayer
render the sub region of coolMapObject into [minRow, minCol, maxRow, maxCol) from 0,0 to width, height, with the minRow maxRow minCol maxCol
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar
 
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot
 
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
 
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine
 
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries
 
renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar
 
renderCellHD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer
 
renderCellHD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries
 
renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar
 
renderCellLD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer
 
renderCellLD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries
 
renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar
 
renderCellSD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer
 
renderCellSD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
 
renderColumn(Graphics2D, CoolMapObject<BASE, VIEW>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.ColumnMap
 
renderColumn(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter
 
renderColumn(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels
 
renderColumn(Graphics2D, CoolMapObject, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar
 
renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot
 
renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
 
renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar
 
renderExternalValues(List<String>, List<Object>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer
 
renderExternalValues(List<String>, List<VIEW>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
 
renderLine(Graphics2D, int, int, int, int, float, Color) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
renderLine(Graphics2D, int, int, int, int, float, Color) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
renderLine(Graphics2D, int, int, int, int, float, Color) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
 
renderRow(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter
 
renderRow(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels
 
renderRow(Graphics2D, CoolMapObject, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
renderRow(Graphics2D, CoolMapObject<BASE, VIEW>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.RowMap
 
renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
 
renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
 
reorder(int, int) - Method in interface org.coolmap.core.api.util.Reorderable
 
Reorderable - Interface in org.coolmap.core.api.util
Created by Keqiang Li on 4/23/16.
reorderColumn(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
 
reorderRow(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
 
repeat(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerContainerToggle
 
repeat(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerToggle
 
replaceColumnNodes(List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
 
replaceRowNodes(List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
This method is only used to remove nodes, but the treenodes are kept
reset() - Method in class org.coolmap.core.util.CImageGradient
 
resetNodeWidth() - Method in class org.coolmap.core.canvas.CoolMapView
reset the width and height of view nodes
resetNodeWidthColumn() - Method in class org.coolmap.core.canvas.CoolMapView
 
resetNodeWidthRow() - Method in class org.coolmap.core.canvas.CoolMapView
 
resetViewMultiplier() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
 
restoreCoolMapObjectState(CoolMapObject, TFile) - Static method in class org.coolmap.core.application.io.internal.coolmapobject.InternalCoolMapObjectIO
 
restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.impl.console.WidgetConsole
 
restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup
 
restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.Widget
 
restoreState(JSONObject) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
 
restoreState(JSONObject) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
override this to make this restorable
restoreState(JSONObject) - Method in class org.coolmap.core.data.aggregator.CAggregator
 
restoreState(CoolMapState) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
 
restoreState(CoolMapState) - Method in class org.coolmap.core.data.CoolMapObject
The state can be restored from a previously saved This state also must contain
restoreState(JSONObject) - Method in class org.coolmap.core.data.snippet.SnippetConverter
 
restoreState(JSONObject) - Method in interface org.coolmap.core.util.StateSavable
state can be restored from JSON
resume() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask
 
reverse(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerContainerToggle
 
reverse(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerToggle
 
row - Variable in class org.coolmap.core.canvas.ui.MatrixCell
 
row(int) - Method in class org.coolmap.core.canvas.ui.MatrixCell
 
row(Integer) - Method in class org.coolmap.core.canvas.ui.MatrixCell
 
ROW - Static variable in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl
 
RowDoubleEqualFilter - Class in org.coolmap.core.util.filter.impl
Created by Keqiang Li on 3/4/16.
RowDoubleEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleEqualFilter
 
RowDoubleFilter - Class in org.coolmap.core.util.filter
Created by Keqiang Li on 3/4/16.
RowDoubleFilter(int, Double) - Constructor for class org.coolmap.core.util.filter.RowDoubleFilter
 
RowDoubleLargerFilter - Class in org.coolmap.core.util.filter.impl
Created by Keqiang Li on 3/2/16.
RowDoubleLargerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleLargerFilter
 
RowDoubleLargerOrEqualFilter - Class in org.coolmap.core.util.filter.impl
Created by Keqiang Li on 3/2/16.
RowDoubleLargerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleLargerOrEqualFilter
 
RowDoubleSmallerFilter - Class in org.coolmap.core.util.filter.impl
Created by Keqiang Li on 3/2/16.
RowDoubleSmallerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleSmallerFilter
 
RowDoubleSmallerOrEqualFilter - Class in org.coolmap.core.util.filter.impl
Created by Keqiang Li on 3/2/16.
RowDoubleSmallerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleSmallerOrEqualFilter
 
RowDrawer - Class in org.coolmap.core.canvas.ui
 
RowDrawer(Point, CoolMapView) - Constructor for class org.coolmap.core.canvas.ui.RowDrawer
 
rowF(Float) - Method in class org.coolmap.core.canvas.ui.MatrixCell
 
RowHighlighter<VALUE> - Class in org.coolmap.core.canvas.ui.sidemaps.impl
 
RowHighlighter(String, CoolMapObject, IdToSidePanelDisplayConverter<VALUE>) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter
 
RowLabels - Class in org.coolmap.core.canvas.ui.sidemaps.impl
 
RowLabels() - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels
 
RowLabels(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels
 
RowMap<BASE,VIEW> - Class in org.coolmap.core.canvas.ui.sidemaps
 
RowMap(CoolMapObject<BASE, VIEW>, String) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.RowMap
 
RowPropertyBasedAggregation<T> - Class in org.coolmap.core.data.aggregator
Created by Keqiang Li on 3/21/16.
RowPropertyBasedAggregation(CoolMapObject, DataPropertyTable, String) - Constructor for class org.coolmap.core.data.aggregator.RowPropertyBasedAggregation
 
RowPropertyBasedDoubleAggregation - Class in org.coolmap.core.data.aggregator
Created by Keqiang Li on 3/21/16.
RowPropertyBasedDoubleAggregation(CoolMapObject, DataPropertyTable, String, CAggregator) - Constructor for class org.coolmap.core.data.aggregator.RowPropertyBasedDoubleAggregation
 
rowsChanged(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel
 
rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation
 
rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSearch
 
rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer
 
rowsChanged(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
rowsChanged(CoolMapObject) - Method in class org.coolmap.core.data.listeners.CObjectAdaptor
 
rowsChanged(CoolMapObject) - Method in interface org.coolmap.core.data.listeners.CObjectListener
 
RowTree - Class in org.coolmap.core.canvas.ui.sidemaps.impl
 
RowTree(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
 
RowTreeNodeExpandingTaskImpl - Class in org.coolmap.core.canvas.ui.sidemaps.task
 
RowTreeNodeExpandingTaskImpl(List<VNode>, Map<VNode, Set<String>>, long, CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.task.RowTreeNodeExpandingTaskImpl
 
run() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithPropertyBasedAggregationTask
 
run() - Method in class org.coolmap.core.data.entity.task.GenerateOntologyBaseOnSamplePropertyTask
 
run() - Method in class org.coolmap.core.data.entity.task.ImportingDataPropertyTableTask
 
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