- ID - Static variable in class org.coolmap.core.util.bioparser.simpleobo.SimpleOBOEntry
-
- IdToSidePanelDisplayConverter<VALUE> - Interface in org.coolmap.core.api.aggregation
-
An interface which will provide a value and a color based on the id passed in
Created by Keqiang Li on 5/6/16.
- IdToSidePanelDisplayConverter.SidePanelValueColorPair<VALUE> - Class in org.coolmap.core.api.aggregation
-
- ImportContinuousPropertyGroupFromFileAction - Class in org.coolmap.core.data.entity.sampleProperty.action
-
- ImportContinuousPropertyGroupFromFileAction(DataPropertyTable, String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.action.ImportContinuousPropertyGroupFromFileAction
-
- importData(TransferHandler.TransferSupport) - Method in class org.coolmap.core.application.ui.util.TableRowTransferHandler
-
- importDataMatrix() - Method in interface org.coolmap.core.api.io.data.CoolMapMatrixImporter
-
Method used to import the data matrix.
- importDataMatrix() - Method in class org.coolmap.core.application.io.internal.cmatrix.DoubleCoolMapMatrixImporter
-
- ImportDataPropertyTableDialog - Class in org.coolmap.core.application.ui.property
-
Created by Keqiang Li on 4/20/16.
- ImportDataPropertyTableDialog(Window) - Constructor for class org.coolmap.core.application.ui.property.ImportDataPropertyTableDialog
-
- importFromFile(File) - Method in interface org.coolmap.core.application.io.external.CoolMapObjectImporter
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- importFromFile(File) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromGEOSOFT
-
- importFromFile(File) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromXLS
-
- importFromFiles(File...) - Method in interface org.coolmap.core.application.io.external.CoolMapObjectImporter
-
import data and save imported from file..
- importFromFiles(File...) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromGEOSOFT
-
- importFromFiles(File...) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromXLS
-
- importGroupSettingFromOBOFile(String, InputStream) - Static method in class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataPropertyGroupSetting
-
- importGroupSettingFromTextFile(String, FileInputStream) - Static method in class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataPropertyGroupSetting
-
- ImportingDataPropertyTableTask - Class in org.coolmap.core.data.entity.task
-
A task to import data entity file
Created by Keqiang Li on 11/18/15.
- ImportingDataPropertyTableTask(File, String, int) - Constructor for class org.coolmap.core.data.entity.task.ImportingDataPropertyTableTask
-
- importOntology() - Method in interface org.coolmap.core.api.io.ontology.CoolMapOntologyImporter
-
method used to import the Ontology
- importOntology() - Method in class org.coolmap.core.data.ontology.AbstractFileCoolMapOntologyImporter
-
- ImportPropertyIDGroupSettingFromOBOAction - Class in org.coolmap.core.data.entity.sampleProperty.action
-
- ImportPropertyIDGroupSettingFromOBOAction(DataPropertyTable, String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.action.ImportPropertyIDGroupSettingFromOBOAction
-
- ImportPropertyNameGroupSettingFromOBOAction - Class in org.coolmap.core.data.entity.sampleProperty.action
-
- ImportPropertyNameGroupSettingFromOBOAction(SamplePropertyMatrix, String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.action.ImportPropertyNameGroupSettingFromOBOAction
-
- ImportSimpleTwoColumnOntologyPanel - Class in org.coolmap.core.application.ui.ontology
-
Created by Keqiang Li on 4/19/16.
- ImportSimpleTwoColumnOntologyPanel(Window) - Constructor for class org.coolmap.core.application.ui.ontology.ImportSimpleTwoColumnOntologyPanel
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- include(RowFilter.Entry<? extends Object, ? extends Object>) - Method in class org.coolmap.core.application.ui.util.SearchableTableRowFilter
-
- initialize() - Static method in class org.coolmap.core.application.CoolMapMaster
-
initialize the necessary elements
- initialize() - Static method in class org.coolmap.core.application.io.IOMaster
-
- initialize(JSONObject) - Method in interface org.coolmap.core.application.plugin.CoolMapPlugin
-
- initialize() - Static method in class org.coolmap.core.application.plugin.PluginMaster
-
- initialize() - Static method in class org.coolmap.core.application.state.StateStorageMaster
-
- initialize() - Static method in class org.coolmap.core.application.widget.WidgetMaster
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer
-
- initialize() - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer
-
called when this view renderer is assigned to a coolmap object
- initialize() - Static method in class org.coolmap.core.data.snippet.SnippetMaster
-
- initialize() - Static method in class org.coolmap.core.util.CoolMapConfig
-
- initialize() - Static method in class org.coolmap.core.util.graphics.UI
-
- initialize() - Static method in class org.coolmap.core.util.Tools
-
- initViewPanel() - Method in class org.coolmap.core.canvas.ui.sidemaps.ColumnMap
-
- initViewPanel() - Method in class org.coolmap.core.canvas.ui.sidemaps.RowMap
-
- insertActiveColNodes(int, List<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- insertActiveColNodes(int, List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- insertActiveRowNodes(int, List<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- insertActiveRowNodes(int, List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- insertColumnNodes(int, List<VNode>, boolean) - Method in class org.coolmap.core.data.CoolMapObject
-
- insertColumnNodes(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
-
- insertRowNodes(int, List<VNode>, boolean) - Method in class org.coolmap.core.data.CoolMapObject
-
- insertRowNodes(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
-
- InternalCoolMapMatrixExporter - Interface in org.coolmap.core.application.io.internal.cmatrix.interfaces
-
write matrices to files
- InternalCoolMapObjectIO - Class in org.coolmap.core.application.io.internal.coolmapobject
-
- InternalCoolMapObjectIO() - Constructor for class org.coolmap.core.application.io.internal.coolmapobject.InternalCoolMapObjectIO
-
- InternalCoolMapOntologyIO - Class in org.coolmap.core.application.io.internal.contology
-
This is used for read and write CoolMap Ontology
- InternalCoolMapOntologyIO() - Constructor for class org.coolmap.core.application.io.internal.contology.InternalCoolMapOntologyIO
-
- InternalDataPropertyTableExporter - Interface in org.coolmap.core.application.io.internal.dataProperty
-
Created by Keqiang Li on 5/5/16.
- InternalDataPropertyTableImporter - Interface in org.coolmap.core.application.io.internal.dataProperty
-
Created by Keqiang Li on 5/5/16.
- IOHelper - Class in org.coolmap.core.application.io
-
Created by Keqiang Li on 4/11/16.
- IOHelper() - Constructor for class org.coolmap.core.application.io.IOHelper
-
- IOMaster - Class in org.coolmap.core.application.io
-
- IOMaster() - Constructor for class org.coolmap.core.application.io.IOMaster
-
- IOTerm - Class in org.coolmap.core.application.io
-
- IOTerm() - Constructor for class org.coolmap.core.application.io.IOTerm
-
- isAggregationEnabled() - Method in class org.coolmap.core.api.aggregation.AbstractIdToSidePanelDisplayConverterNoOntology
-
- isAggregationEnabled() - Method in class org.coolmap.core.api.aggregation.AbstractIdToSidePanelDisplayConverterUseOntology
-
- isAggregationEnabled() - Method in interface org.coolmap.core.api.aggregation.IdToSidePanelDisplayConverter
-
- isAntiAliased() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isCategorizedProp(String) - Method in class org.coolmap.core.data.entity.sampleProperty.model.SamplePropertyMatrix
-
- isCellEditable(int, int) - Method in class org.coolmap.core.application.ui.util.DataMatrixTableRowHeader
-
- isCellSelected(int, int) - Method in class org.coolmap.core.canvas.CoolMapView
-
- isCellSelected(int, int) - Method in class org.coolmap.core.data.CoolMapObject
-
- isColumnPanelsVisible() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isColValidCell(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isColValidRange(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isCurHasHeader() - Method in class org.coolmap.core.application.ui.util.DelimitedFilePreviewPanel
-
- isCurStateSaved() - Method in class org.coolmap.core.application.state.StateQueue
-
- isDataViewValid() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap
-
- isDestroyed() - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl
-
- isDragging - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
-
- isDrawHover() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isEnabled() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap
-
- isExpanded() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- isExpanding() - Method in class org.coolmap.core.canvas.ui.sidemaps.util.ExpandingControlDialog
-
- isFilterActive() - Method in class org.coolmap.core.data.CoolMapObject
-
- isFinished() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask
-
- isGroupNode() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- isHighestZoom() - Method in class org.coolmap.core.canvas.ui.ZoomControl
-
- isIgnoreEmptyNodes() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isInitialized() - Static method in class org.coolmap.core.util.CoolMapConfig
-
- isLabelVisible() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter
-
- isLabelVisible() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter
-
- isLabelVisible() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SidePanelHighlighter
-
- isLowestZoom() - Method in class org.coolmap.core.canvas.ui.ZoomControl
-
- isMarked() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- isMaximized() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isMinimized() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isOnlyHasDataHeaders() - Method in class org.coolmap.core.application.ui.util.DelimitedFilePreviewPanel
-
- isPaintingPlotHoverEnabled() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
-
- isPaintingPlotHoverEnabled() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
-
- isPaintingPlotHoverEnabled() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
-
- isPathHighlightingEnabled() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
-
- isPathHighlightingEnabled() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
-
- isPathHighlightingEnabled() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
-
- isPropertyBasedAggregationEnabled() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isPropValid(String) - Method in class org.coolmap.core.data.entity.sampleProperty.model.SamplePropertyMatrix
-
- isResizingCellEnabled() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isRowPanelsVisible() - Method in class org.coolmap.core.canvas.CoolMapView
-
- isRowValidCell(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isRowValidRange(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isSelecting() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree
-
- isSelecting() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree
-
- isSelecting() - Method in interface org.coolmap.core.canvas.ui.sidemaps.Selectable
-
- isSingleNode() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- isValid() - Method in class org.coolmap.core.data.annotation.PointAnnotation
-
- isValidCell(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isValidRange(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.AbstractIdToSidePanelDisplayConverterNoOntology
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.AbstractIdToSidePanelDisplayConverterUseOntology
-
- isValueNumeric() - Method in interface org.coolmap.core.api.aggregation.IdToSidePanelDisplayConverter
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.SidePanelCategoricalValueAggregator
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.SidePanelCategoricalValueToColorMapper
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.SidePanelContinuousValueAggregator
-
- isValueNumeric() - Method in class org.coolmap.core.api.aggregation.SidePanelContinuousValueToColorMapper
-
- isValueNumeric() - Method in interface org.coolmap.core.api.aggregation.SidePanelValueAggregator
-
- isValueNumeric() - Method in interface org.coolmap.core.api.aggregation.SidePanelValueToColorMapper
-
- isViewMatrixValid() - Method in class org.coolmap.core.data.CoolMapObject
-
- isVoid() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- itemStateChanged(ItemEvent) - Method in class org.coolmap.core.application.ui.filter.FilterConfigDialog
-
- itemStateChanged(ItemEvent) - Method in class org.coolmap.core.application.ui.property.AddPropertyBasedAggregationDialog
-
- itemStateChanged(ItemEvent) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor
-
Invoked when an item has been selected or deselected by the user.