org.coolmap.core.data.ontology.model

Class CoolMapOntologyImpl

java.lang.Object

org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

All Implemented Interfaces:

CoolMapOntology

public final class CoolMapOntologyImpl
extends java.lang.Object
implements CoolMapOntology

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.Integer	COLUMN
static java.lang.String	NODE_IRI_STRING
static java.lang.String	NODE_LABEL_STRING
static java.lang.String	NODE_NAME_STRING
static java.lang.Integer	ROW

Constructor Summary

Constructors

Constructor and Description
CoolMapOntologyImpl(java.lang.String name, java.lang.String description)
CoolMapOntologyImpl(java.lang.String name, java.lang.String description, java.lang.String ID)

Method Summary

Modifier and Type	Method and Description
void	addPreset(COntologyPreset preset)
void	addRelationship(java.lang.String parentTermId, java.lang.String childTermId) Add the specified parent-child relationship in this Ontology if the relationship doesn't exist
void	addRelationshipNoUpdateDepth(java.lang.String parentId, java.lang.String childId)
void	addRelationshipUpdateDepth(com.google.common.collect.Multimap<java.lang.String,java.lang.String> parentToChild)
void	destroy()
java.util.HashSet<java.lang.String>	getAllNodesWithChildrenIds()
java.util.HashSet<java.lang.String>	getAllNodesWithParentsIds()
java.util.ArrayList<java.lang.String>	getAllNodesWithParentsOrderedIds()
java.util.Set<java.lang.String>	getAllTermIds() Get all term IDs
java.lang.String	getAttribute(java.lang.String nodeId, java.lang.String attrName)
java.util.List<java.lang.String>	getAttributeNames()
java.lang.Integer[]	getBaseIndices(CoolMapMatrix matrix, java.lang.Integer direction, java.lang.String nodeId)
java.lang.String	getDescription() Get the description of this Ontology
COntologyEdgeAttributeImpl	getEdgeAttribute(java.lang.String parentId, java.lang.String childId)
int	getFittingLevels(int maxNumber)
java.lang.Float	getHeightDifference(java.lang.String parentId, java.lang.String childId)
java.lang.String	getID() Get the ID of this Ontology
java.util.ArrayList<java.lang.String>	getImmediateChildrenOrderedIds(java.lang.String parentId)
java.util.ArrayList<java.lang.String>	getImmediateChildTermIds(java.lang.String parentTermId) Get all the immediate child terms of a specified parent term
java.util.ArrayList<java.lang.String>	getImmediateParentsOrderedIds(java.lang.String childId)
java.util.ArrayList<java.lang.String>	getImmediateParentTermIds(java.lang.String childTermId) Get all the immediate parent terms of a specified child term
java.util.HashSet<java.lang.String>	getLeafTermIds() Get all leaf term IDs
java.lang.Integer	getMinimalDepthFromLeaves(java.lang.String nodeId)
java.lang.String	getName() Get the name of this Ontology
java.util.Collection<COntologyPreset>	getPresets()
java.util.Set<java.lang.String>	GetRootTermIds() Get all root term IDs
java.util.Set<VNode>	getRootVNodes()
java.util.List<VNode>	getRootVNodesOrdered()
java.awt.Color	getViewColor()
VNode	getVNodeById(java.lang.String nodeId)
boolean	hasChildTerms(java.lang.String nodeId) Check if a specified term has at least one child term
boolean	hasParentTerms(java.lang.String nodeId) Check if a specified term has at least one parent term
boolean	hasRelationship(java.lang.String parentTermId, java.lang.String childTermId) Check if a specified parent-child relationship exists in this Ontology
boolean	hasTerm(java.lang.String termId) Check if a term with specified ID exists
boolean	isDestroyed()
CoolMapOntologyImpl	rawCopy(java.lang.String newName, java.lang.String newDescription) Copy an ontology with only the parent-child relationships and the attribute information without depth
void	removeAll()
void	setAttribute(java.lang.String nodeId, java.lang.String attrName, java.lang.String attributeValue)
void	setDescription(java.lang.String description) Set or change the description of this Ontology
void	setEdgeAttribute(java.lang.String parentId, java.lang.String childId, COntologyEdgeAttributeImpl attr)
void	setID(java.lang.String ID)
void	setName(java.lang.String name) Set or rename this Ontology
void	setViewColor(java.awt.Color color)
java.lang.String	toString()
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

NODE_NAME_STRING

public static final java.lang.String NODE_NAME_STRING

See Also:

Constant Field Values

NODE_LABEL_STRING

public static final java.lang.String NODE_LABEL_STRING

See Also:

Constant Field Values

NODE_IRI_STRING

public static final java.lang.String NODE_IRI_STRING

See Also:

Constant Field Values

ROW

public static final java.lang.Integer ROW

COLUMN

public static final java.lang.Integer COLUMN

Constructor Detail

CoolMapOntologyImpl

public CoolMapOntologyImpl(java.lang.String name,
                           java.lang.String description)

CoolMapOntologyImpl

public CoolMapOntologyImpl(java.lang.String name,
                           java.lang.String description,
                           java.lang.String ID)

Method Detail

addPreset

public void addPreset(COntologyPreset preset)

getPresets

public java.util.Collection<COntologyPreset> getPresets()

getAttribute

public java.lang.String getAttribute(java.lang.String nodeId,
                                     java.lang.String attrName)

getAttributeNames

public java.util.List<java.lang.String> getAttributeNames()

setAttribute

public void setAttribute(java.lang.String nodeId,
                         java.lang.String attrName,
                         java.lang.String attributeValue)

destroy

public void destroy()

isDestroyed

public boolean isDestroyed()

setViewColor

public void setViewColor(java.awt.Color color)

getViewColor

public java.awt.Color getViewColor()

getName

public java.lang.String getName()

Description copied from interface: CoolMapOntology

Get the name of this Ontology

Specified by:

getName in interface CoolMapOntology

Returns:

name of the Ontology

setName

public void setName(java.lang.String name)

Description copied from interface: CoolMapOntology

Set or rename this Ontology

Specified by:

setName in interface CoolMapOntology

Parameters:

name - the new name of the Otology to be used

getDescription

public java.lang.String getDescription()

Description copied from interface: CoolMapOntology

Get the description of this Ontology

Specified by:

getDescription in interface CoolMapOntology

Returns:

description of the Ontology

setDescription

public void setDescription(java.lang.String description)

Description copied from interface: CoolMapOntology

Set or change the description of this Ontology

Specified by:

setDescription in interface CoolMapOntology

Parameters:

description - the new description of the Ontology

getLeafTermIds

public java.util.HashSet<java.lang.String> getLeafTermIds()

Description copied from interface: CoolMapOntology

Get all leaf term IDs

Specified by:

getLeafTermIds in interface CoolMapOntology

Returns:

leaf term IDs

GetRootTermIds

public java.util.Set<java.lang.String> GetRootTermIds()

Description copied from interface: CoolMapOntology

Get all root term IDs

Specified by:

GetRootTermIds in interface CoolMapOntology

Returns:

root term IDs

getVNodeById

public VNode getVNodeById(java.lang.String nodeId)

getRootVNodes

public java.util.Set<VNode> getRootVNodes()

getFittingLevels

public int getFittingLevels(int maxNumber)

getRootVNodesOrdered

public java.util.List<VNode> getRootVNodesOrdered()

getAllNodesWithChildrenIds

public java.util.HashSet<java.lang.String> getAllNodesWithChildrenIds()

getAllNodesWithParentsOrderedIds

public java.util.ArrayList<java.lang.String> getAllNodesWithParentsOrderedIds()

getAllNodesWithParentsIds

public java.util.HashSet<java.lang.String> getAllNodesWithParentsIds()

getAllTermIds

public java.util.Set<java.lang.String> getAllTermIds()

Description copied from interface: CoolMapOntology

Get all term IDs

Specified by:

getAllTermIds in interface CoolMapOntology

Returns:

all term IDs

hasTerm

public boolean hasTerm(java.lang.String termId)

Description copied from interface: CoolMapOntology

Check if a term with specified ID exists

Specified by:

hasTerm in interface CoolMapOntology

Parameters:

termId - term ID

Returns:

true if the term found, otherwise false

getImmediateChildTermIds

public java.util.ArrayList<java.lang.String> getImmediateChildTermIds(java.lang.String parentTermId)

Description copied from interface: CoolMapOntology

Get all the immediate child terms of a specified parent term

Specified by:

getImmediateChildTermIds in interface CoolMapOntology

Parameters:

parentTermId - ID of the parent term

Returns:

all child term IDs

getImmediateParentTermIds

public java.util.ArrayList<java.lang.String> getImmediateParentTermIds(java.lang.String childTermId)

Description copied from interface: CoolMapOntology

Get all the immediate parent terms of a specified child term

Specified by:

getImmediateParentTermIds in interface CoolMapOntology

Parameters:

childTermId - ID of the child term

Returns:

all parent term IDs

getImmediateChildrenOrderedIds

public java.util.ArrayList<java.lang.String> getImmediateChildrenOrderedIds(java.lang.String parentId)

getImmediateParentsOrderedIds

public java.util.ArrayList<java.lang.String> getImmediateParentsOrderedIds(java.lang.String childId)

getBaseIndices

public java.lang.Integer[] getBaseIndices(CoolMapMatrix matrix,
                                          java.lang.Integer direction,
                                          java.lang.String nodeId)

getMinimalDepthFromLeaves

public java.lang.Integer getMinimalDepthFromLeaves(java.lang.String nodeId)

hasChildTerms

public boolean hasChildTerms(java.lang.String nodeId)

Description copied from interface: CoolMapOntology

Check if a specified term has at least one child term

Specified by:

hasChildTerms in interface CoolMapOntology

Parameters:

nodeId - the ID of the term on which to check

Returns:

true if this term has at least one child term, otherwise false

hasParentTerms

public boolean hasParentTerms(java.lang.String nodeId)

Description copied from interface: CoolMapOntology

Check if a specified term has at least one parent term

Specified by:

hasParentTerms in interface CoolMapOntology

Parameters:

nodeId - the ID of the term on which to check

Returns:

true if this term has at least one parent term, otherwise false

addRelationship

public void addRelationship(java.lang.String parentTermId,
                            java.lang.String childTermId)

Description copied from interface: CoolMapOntology

Add the specified parent-child relationship in this Ontology if the relationship doesn't exist

Specified by:

addRelationship in interface CoolMapOntology

Parameters:

parentTermId - ID of the parent term

childTermId - ID of the child term

addRelationshipNoUpdateDepth

public void addRelationshipNoUpdateDepth(java.lang.String parentId,
                                         java.lang.String childId)

addRelationshipUpdateDepth

public void addRelationshipUpdateDepth(com.google.common.collect.Multimap<java.lang.String,java.lang.String> parentToChild)

validate

public void validate()

removeAll

public void removeAll()

getID

public final java.lang.String getID()

Description copied from interface: CoolMapOntology

Get the ID of this Ontology

Specified by:

getID in interface CoolMapOntology

Returns:

ID of the Ontology

setID

public final void setID(java.lang.String ID)

getHeightDifference

public java.lang.Float getHeightDifference(java.lang.String parentId,
                                           java.lang.String childId)

setEdgeAttribute

public void setEdgeAttribute(java.lang.String parentId,
                             java.lang.String childId,
                             COntologyEdgeAttributeImpl attr)

getEdgeAttribute

public COntologyEdgeAttributeImpl getEdgeAttribute(java.lang.String parentId,
                                                   java.lang.String childId)

hasRelationship

public boolean hasRelationship(java.lang.String parentTermId,
                               java.lang.String childTermId)

Description copied from interface: CoolMapOntology

Check if a specified parent-child relationship exists in this Ontology

Specified by:

hasRelationship in interface CoolMapOntology

Parameters:

parentTermId - ID of the parent term

childTermId - ID of the child term

Returns:

true if the relationship exists, otherwise false

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

rawCopy

public CoolMapOntologyImpl rawCopy(java.lang.String newName,
                                   java.lang.String newDescription)

Copy an ontology with only the parent-child relationships and the attribute information without depth

Parameters:

newName - name for the new ontology

newDescription - description of the new ontology

Returns:

the copied ontology