org.coolmap.core.util.statistics

Class CoolMapDataUtil

java.lang.Object

org.coolmap.core.util.statistics.CoolMapDataUtil

public class CoolMapDataUtil
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
CoolMapDataUtil()

Method Summary

Modifier and Type	Method and Description
static CoolMapDoubleMatrix	copySelectedMatrixAsNumericMatrixWithLeaf(CoolMapObject coolMapObjectToCopyFrom, java.lang.String matrixName)
static CoolMapDoubleMatrix	copySelectedMatrixAsNumericMatrixWithoutLeaf(CoolMapObject coolMapObjectToCopyFrom, java.lang.String matrixName)
static CoolMapDoubleMatrix	copyWholeMatrixAsNumericMatrixWithLeaf(java.lang.String matrixName)
static CoolMapDoubleMatrix	copyWholeMatrixAsNumericMatrixWithoutLeaf(java.lang.String matrixName)
static java.util.List<java.lang.String>	getColumnLeafNodeIds(VNode columnNode, CoolMapMatrix matrix)
static java.util.List<VNode>	getLeafNodes(VNode node)
static java.util.List<java.lang.String>	getRowLeafNodeIds(VNode rowNode, CoolMapMatrix matrix)
static java.util.List<java.lang.String>	getSelectedColumnLeafNodeNames()
static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>>	getSelectedColumnLeafNodeValues()
static java.util.List<java.lang.String>	getSelectedColumnViewNodeNames()
static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>>	getSelectedColumnViewNodeValues()
static java.util.List<java.lang.String>	getSelectedLeafNodeNames()
static java.util.List<java.lang.String>	getSelectedRowLeafNodeNames()
static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>>	getSelectedRowLeafNodeValues()
static java.util.List<java.lang.String>	getSelectedRowViewNodeNames()
static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>>	getSelectedRowViewNodeValues()
static CoolMapMatrix<java.lang.Double>	joinMatricesByColumnIds(java.lang.String joinedMatrixName, java.util.Collection<CoolMapMatrix<java.lang.Double>> matrices)
static CoolMapMatrix<java.lang.Double>	joinMatricesByRowIds(java.lang.String joinedMatrixName, java.util.Collection<CoolMapMatrix<java.lang.Double>> matrices)
static CoolMapObject	loadMatrixAsNewCoolMapObject(java.lang.String nameOfNewCoolMapObject, boolean isSelected, boolean withLeaf) This function copies the selected region and loads it to a new CoolMap Object

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoolMapDataUtil

public CoolMapDataUtil()

Method Detail

getSelectedRowLeafNodeNames

public static java.util.List<java.lang.String> getSelectedRowLeafNodeNames()

getSelectedColumnLeafNodeNames

public static java.util.List<java.lang.String> getSelectedColumnLeafNodeNames()

getSelectedRowViewNodeNames

public static java.util.List<java.lang.String> getSelectedRowViewNodeNames()

getSelectedColumnViewNodeNames

public static java.util.List<java.lang.String> getSelectedColumnViewNodeNames()

getSelectedLeafNodeNames

public static java.util.List<java.lang.String> getSelectedLeafNodeNames()

getSelectedRowViewNodeValues

public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> getSelectedRowViewNodeValues()

getSelectedColumnViewNodeValues

public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> getSelectedColumnViewNodeValues()

getSelectedRowLeafNodeValues

public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> getSelectedRowLeafNodeValues()

getSelectedColumnLeafNodeValues

public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> getSelectedColumnLeafNodeValues()

getRowLeafNodeIds

public static java.util.List<java.lang.String> getRowLeafNodeIds(VNode rowNode,
                                                                 CoolMapMatrix matrix)

getColumnLeafNodeIds

public static java.util.List<java.lang.String> getColumnLeafNodeIds(VNode columnNode,
                                                                    CoolMapMatrix matrix)

loadMatrixAsNewCoolMapObject

public static CoolMapObject loadMatrixAsNewCoolMapObject(java.lang.String nameOfNewCoolMapObject,
                                                         boolean isSelected,
                                                         boolean withLeaf)

This function copies the selected region and loads it to a new CoolMap Object

Parameters:

nameOfNewCoolMapObject - name of the new CoolMap object to be created

isSelected - copy the selected region or the whole matrix as default

withLeaf - if copy the currently layer or copy the leaf node data

Returns:

the newly created CoolMap object

copySelectedMatrixAsNumericMatrixWithLeaf

public static CoolMapDoubleMatrix copySelectedMatrixAsNumericMatrixWithLeaf(CoolMapObject coolMapObjectToCopyFrom,
                                                                            java.lang.String matrixName)

copySelectedMatrixAsNumericMatrixWithoutLeaf

public static CoolMapDoubleMatrix copySelectedMatrixAsNumericMatrixWithoutLeaf(CoolMapObject coolMapObjectToCopyFrom,
                                                                               java.lang.String matrixName)

copyWholeMatrixAsNumericMatrixWithLeaf

public static CoolMapDoubleMatrix copyWholeMatrixAsNumericMatrixWithLeaf(java.lang.String matrixName)

copyWholeMatrixAsNumericMatrixWithoutLeaf

public static CoolMapDoubleMatrix copyWholeMatrixAsNumericMatrixWithoutLeaf(java.lang.String matrixName)

getLeafNodes

public static java.util.List<VNode> getLeafNodes(VNode node)

joinMatricesByRowIds

public static CoolMapMatrix<java.lang.Double> joinMatricesByRowIds(java.lang.String joinedMatrixName,
                                                                   java.util.Collection<CoolMapMatrix<java.lang.Double>> matrices)

joinMatricesByColumnIds

public static CoolMapMatrix<java.lang.Double> joinMatricesByColumnIds(java.lang.String joinedMatrixName,
                                                                      java.util.Collection<CoolMapMatrix<java.lang.Double>> matrices)