org.coolmap.core.application

Class CoolMapMaster

java.lang.Object

org.coolmap.core.application.CoolMapMaster

public final class CoolMapMaster
extends java.lang.Object

Method Summary

Modifier and Type	Method and Description
static void	addActiveCoolMapChangedListener(ActiveCoolMapChangedListener lis)
static void	addDataPropertyTable(DataPropertyTable<java.lang.String,java.lang.String,java.lang.String> dataPropertyTable)
static void	addNewBaseMatrix(java.util.Collection<CoolMapMatrix> matrices)
static void	addNewBaseMatrix(CoolMapMatrix matrix)
static void	addNewCOntology(java.util.Collection<CoolMapOntologyImpl> ontologies)
static void	addNewCOntology(CoolMapOntologyImpl ontology)
static void	addNewCoolMapObject(java.util.Collection<CoolMapObject> objects)
static void	addNewCoolMapObject(CoolMapObject object) add a new coolmap object into store.
static void	addNewCoolMapView(CoolMapView view)
static void	destroyCMatrices(java.util.Collection<CoolMapMatrix> matrices)
static void	destroyCoolMapObject(CoolMapObject object)
static void	destroyCoolMapView(CoolMapObject object)
static void	forceFireActiveCoolMapObjectChange(CoolMapObject newObject)
static CoolMapObject	getActiveCoolMapObject()
static ActiveCoolMapObjectListenerTunnel	getActiveCoolMapObjectListenerDelegate()
static CoolMapMainFrame	getCMainFrame()
static CoolMapMatrix	getCMatrixByID(java.lang.String identifier)
static CoolMapOntologyImpl	getCOntologyByID(java.lang.String identifier)
static CoolMapObject	getCoolMapObjectByID(java.lang.String ID)
static java.util.List<CoolMapObject>	getCoolMapObjects()
static java.util.List<DataPropertyTable<java.lang.String,java.lang.String,java.lang.String>>	getDataPropertyTables()
static java.util.List<CoolMapMatrix>	getLoadedCMatrices()
static java.util.List<CoolMapOntologyImpl>	getLoadedCOntologies()
static Session	getSession()
static void	initialize() initialize the necessary elements
static CoolMapObject	loadNewMatrix(CoolMapObject parentCoolMapObject, CoolMapMatrix<java.lang.Double> matrix)
static CoolMapObject	loadNewMatrix(CoolMapObject parentCoolMapObject, java.lang.String matrixName, double[][] data, java.util.List<java.lang.String> rowLabels, java.util.List<java.lang.String> columnLabels)
static CoolMapObject	loadNewMatrix(CoolMapObject parentCoolMapObject, java.lang.String matrixName, double[][] data, java.lang.String[] rowLabels, java.lang.String[] columnLabels, int rowNum, int colNum)
static void	newSession(java.lang.String name, java.lang.String path)
static void	removeDataPropertyTable(DataPropertyTable dataPropertyTable)
static void	removeOnology(CoolMapOntologyImpl ontology)
static void	renameCMatrix(java.lang.String matrixID, java.lang.String newName)
static void	renameCOntology(java.lang.String ontologyID, java.lang.String newName)
static void	setActiveCoolMapObject(CoolMapObject newObject)
static void	updateSession(java.lang.String name, java.lang.String path)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getSession

public static Session getSession()

getCMatrixByID

public static CoolMapMatrix getCMatrixByID(java.lang.String identifier)

newSession

public static void newSession(java.lang.String name,
                              java.lang.String path)

updateSession

public static void updateSession(java.lang.String name,
                                 java.lang.String path)

getActiveCoolMapObjectListenerDelegate

public static ActiveCoolMapObjectListenerTunnel getActiveCoolMapObjectListenerDelegate()

getCoolMapObjects

public static java.util.List<CoolMapObject> getCoolMapObjects()

getCoolMapObjectByID

public static CoolMapObject getCoolMapObjectByID(java.lang.String ID)

initialize

public static void initialize()

initialize the necessary elements

addActiveCoolMapChangedListener

public static void addActiveCoolMapChangedListener(ActiveCoolMapChangedListener lis)

getCMainFrame

public static CoolMapMainFrame getCMainFrame()

getActiveCoolMapObject

public static CoolMapObject getActiveCoolMapObject()

setActiveCoolMapObject

public static void setActiveCoolMapObject(CoolMapObject newObject)

forceFireActiveCoolMapObjectChange

public static void forceFireActiveCoolMapObjectChange(CoolMapObject newObject)

addNewCoolMapObject

public static void addNewCoolMapObject(CoolMapObject object)

add a new coolmap object into store. This should be a newly imported coolmap object, with empty side panels

Parameters:

object -

addNewCoolMapView

public static void addNewCoolMapView(CoolMapView view)

addNewCoolMapObject

public static void addNewCoolMapObject(java.util.Collection<CoolMapObject> objects)

addNewBaseMatrix

public static void addNewBaseMatrix(java.util.Collection<CoolMapMatrix> matrices)

addNewBaseMatrix

public static void addNewBaseMatrix(CoolMapMatrix matrix)

addNewCOntology

public static void addNewCOntology(java.util.Collection<CoolMapOntologyImpl> ontologies)

addNewCOntology

public static void addNewCOntology(CoolMapOntologyImpl ontology)

getLoadedCMatrices

public static java.util.List<CoolMapMatrix> getLoadedCMatrices()

getCOntologyByID

public static CoolMapOntologyImpl getCOntologyByID(java.lang.String identifier)

getLoadedCOntologies

public static java.util.List<CoolMapOntologyImpl> getLoadedCOntologies()

destroyCoolMapObject

public static void destroyCoolMapObject(CoolMapObject object)

destroyCoolMapView

public static void destroyCoolMapView(CoolMapObject object)

renameCMatrix

public static void renameCMatrix(java.lang.String matrixID,
                                 java.lang.String newName)

renameCOntology

public static void renameCOntology(java.lang.String ontologyID,
                                   java.lang.String newName)

destroyCMatrices

public static void destroyCMatrices(java.util.Collection<CoolMapMatrix> matrices)

removeOnology

public static void removeOnology(CoolMapOntologyImpl ontology)

loadNewMatrix

public static CoolMapObject loadNewMatrix(CoolMapObject parentCoolMapObject,
                                          java.lang.String matrixName,
                                          double[][] data,
                                          java.util.List<java.lang.String> rowLabels,
                                          java.util.List<java.lang.String> columnLabels)

loadNewMatrix

public static CoolMapObject loadNewMatrix(CoolMapObject parentCoolMapObject,
                                          CoolMapMatrix<java.lang.Double> matrix)

loadNewMatrix

public static CoolMapObject loadNewMatrix(CoolMapObject parentCoolMapObject,
                                          java.lang.String matrixName,
                                          double[][] data,
                                          java.lang.String[] rowLabels,
                                          java.lang.String[] columnLabels,
                                          int rowNum,
                                          int colNum)

addDataPropertyTable

public static void addDataPropertyTable(DataPropertyTable<java.lang.String,java.lang.String,java.lang.String> dataPropertyTable)

getDataPropertyTables

public static java.util.List<DataPropertyTable<java.lang.String,java.lang.String,java.lang.String>> getDataPropertyTables()

removeDataPropertyTable

public static void removeDataPropertyTable(DataPropertyTable dataPropertyTable)