org.coolmap.core.data.ontology.util

Class OntologyHelper

java.lang.Object

org.coolmap.core.data.ontology.util.OntologyHelper

public class OntologyHelper
extends java.lang.Object

Created by Keqiang Li on 4/18/16.

Constructor Summary

Constructors

Constructor and Description
OntologyHelper()

Method Summary

Modifier and Type	Method and Description
static java.util.List<java.lang.String>	convertOntologyTo2ColumnLines(CoolMapOntologyImpl ontology) A function to convert a ontology to parent-child format(simple two column)
static java.util.List<java.lang.String>	convertOntologyToOBOLines(CoolMapOntologyImpl ontology)
static CoolMapOntologyImpl	generateOntology2ColumnFormat(java.lang.String ontologyName, java.lang.String parentChildString)
static CoolMapOntologyImpl	generateOntologyFromOBOFormat(java.lang.String ontologyName, java.lang.String oboString)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyHelper

public OntologyHelper()

Method Detail

convertOntologyToOBOLines

public static java.util.List<java.lang.String> convertOntologyToOBOLines(CoolMapOntologyImpl ontology)

convertOntologyTo2ColumnLines

public static java.util.List<java.lang.String> convertOntologyTo2ColumnLines(CoolMapOntologyImpl ontology)

A function to convert a ontology to parent-child format(simple two column)

Parameters:

ontology - the ontology to convert

Returns:

a String list. Each string is a parent-child relationship, with parent comes first and child the second and separated by a tab delimiter

generateOntology2ColumnFormat

public static CoolMapOntologyImpl generateOntology2ColumnFormat(java.lang.String ontologyName,
                                                                java.lang.String parentChildString)
                                                         throws java.io.IOException

Throws:

java.io.IOException

generateOntologyFromOBOFormat

public static CoolMapOntologyImpl generateOntologyFromOBOFormat(java.lang.String ontologyName,
                                                                java.lang.String oboString)
                                                         throws java.io.IOException

Throws:

java.io.IOException