- main(String[]) - Static method in class org.coolmap.core.application.ui.ontology.ApplyOntologyToSideTreeDialog
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- main(String[]) - Static method in class org.coolmap.core.application.ui.ontology.GenerateOntologyFromDataPropertyTablePanel
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- main(String[]) - Static method in class org.coolmap.core.application.ui.ontology.MappingFileSelectionPanel
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- main(String[]) - Static method in class org.coolmap.core.application.ui.ontology.OntologyImportingPanel
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- main(String[]) - Static method in class org.coolmap.core.application.ui.ontology.OntologySelectionPanel
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- main(String[]) - Static method in class org.coolmap.core.application.utils.TaskEngine
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- main(String[]) - Static method in class org.coolmap.core.application.widget.impl.ontology.OntologyBrowser
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- main(String[]) - Static method in class org.coolmap.core.CoolMap
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- main(String[]) - Static method in class org.coolmap.core.util.bioparser.Bioparser
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- main(String[]) - Static method in class org.coolmap.core.util.graphics.GradientEditorPanel
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- main(String[]) - Static method in class org.coolmap.core.util.graphics.UI
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- main(String[]) - Static method in class org.coolmap.core.util.network.LinLogLayout
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Reads a graph from a specified input file,
computes a layout and a clustering,
writes the layout and the clustering into a specified output file,
and displays them in a dialog.
- Main - Class in org.coolmap.core.util.network
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- Main() - Constructor for class org.coolmap.core.util.network.Main
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- main(String[]) - Static method in class org.coolmap.core.util.network.Main
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- main(String[]) - Static method in class org.coolmap.core.util.OntologyPermutator
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- map(String, String) - Method in class org.coolmap.core.api.aggregation.SidePanelCategoricalValueToColorMapper
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- map(String, Double) - Method in class org.coolmap.core.api.aggregation.SidePanelContinuousValueToColorMapper
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- map(String, VALUE) - Method in interface org.coolmap.core.api.aggregation.SidePanelValueToColorMapper
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- mapAnchorMoved(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel
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- mapAnchorMoved(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation
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- mapAnchorMoved(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer
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- mapAnchorMoved(CoolMapObject) - Method in class org.coolmap.core.canvas.listeners.CViewAdaptor
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- mapAnchorMoved(CoolMapObject) - Method in interface org.coolmap.core.canvas.listeners.CViewListener
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- MapLayer<BASE,VIEW> - Interface in org.coolmap.core.canvas.ui.viewmaps
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a layer that only responds
- MappingDataNodeToOntologyNodeDialog - Class in org.coolmap.core.application.ui.ontology
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Created by Keqiang Li on 4/13/16.
- MappingDataNodeToOntologyNodeDialog(Window, CoolMapOntologyImpl) - Constructor for class org.coolmap.core.application.ui.ontology.MappingDataNodeToOntologyNodeDialog
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- MappingFileSelectionPanel - Class in org.coolmap.core.application.ui.ontology
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Created by Keqiang Li on 4/13/16.
- mapZoomChanged(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel
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- mapZoomChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation
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- mapZoomChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer
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- mapZoomChanged(CoolMapObject) - Method in class org.coolmap.core.canvas.listeners.CViewAdaptor
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- mapZoomChanged(CoolMapObject) - Method in interface org.coolmap.core.canvas.listeners.CViewListener
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- mapZoomChanged(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels
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- mark(boolean) - Method in class org.coolmap.core.data.cmatrixview.model.VNode
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- markAncestors(boolean) - Method in class org.coolmap.core.data.cmatrixview.model.VNode
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- markNull(Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.viewmaps.FilterLayer
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- MatrixCell - Class in org.coolmap.core.canvas.ui
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- MatrixCell() - Constructor for class org.coolmap.core.canvas.ui.MatrixCell
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- MatrixCell(Float, Float) - Constructor for class org.coolmap.core.canvas.ui.MatrixCell
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- MatrixCell(Integer, Integer) - Constructor for class org.coolmap.core.canvas.ui.MatrixCell
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- MatrixUtils - Class in org.coolmap.core.util
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- MatrixUtils() - Constructor for class org.coolmap.core.util.MatrixUtils
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- MessageHandler - Interface in org.coolmap.core.application.listeners
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Created by Keqiang Li on 4/12/16.
- Messenger - Class in org.coolmap.core.application.utils
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- Messenger() - Constructor for class org.coolmap.core.application.utils.Messenger
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- minimizeEnergy(Map<Node, double[]>, int) - Method in class org.coolmap.core.util.network.MinimizerBarnesHut
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Iteratively minimizes energy using the Barnes-Hut algorithm.
- minimizeEnergy(Map<Node, double[]>, int) - Method in class org.coolmap.core.util.network.MinimizerClassic
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Iteratively minimizes energy using the Barnes-Hut algorithm.
- MinimizerBarnesHut - Class in org.coolmap.core.util.network
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Minimizer for the LinLog energy model and its generalizations,
for computing two- and three-dimensional graph layouts.
- MinimizerBarnesHut(Collection<Node>, Collection<Edge>, double, double, double) - Constructor for class org.coolmap.core.util.network.MinimizerBarnesHut
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Initializes the attributes.
- MinimizerClassic - Class in org.coolmap.core.util.network
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Minimizer for the LinLog energy model and its generalizations,
for computing graph layouts with 2 or more dimensions.
- MinimizerClassic(Collection<Node>, Collection<Edge>, double, double, double, int) - Constructor for class org.coolmap.core.util.network.MinimizerClassic
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Initializes the attributes.
- mixOpacity(Color, float) - Static method in class org.coolmap.core.util.graphics.UI
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- mixOpacity(Color, int) - Static method in class org.coolmap.core.util.graphics.UI
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- Model2DCMatrix<T> - Class in org.coolmap.core.data.cmatrix.model
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base matrix represent the original imported data.
- Model2DCMatrix(String, int, int, Class<T>, String) - Constructor for class org.coolmap.core.data.cmatrix.model.Model2DCMatrix
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- Model2DCMatrix(String, Integer, Integer, Class<T>) - Constructor for class org.coolmap.core.data.cmatrix.model.Model2DCMatrix
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- mouseClicked(MouseEvent) - Method in class org.coolmap.core.application.ui.util.JTableButtonCell
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- mouseEntered(MouseEvent) - Method in class org.coolmap.core.application.ui.util.JTableButtonCell
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- mouseEntered(MouseEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
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- mouseExited(MouseEvent) - Method in class org.coolmap.core.application.ui.util.JTableButtonCell
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- mouseExited(MouseEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
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- mouseMoved(MouseEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
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- mousePressed(MouseEvent) - Method in class org.coolmap.core.application.ui.util.JTableButtonCell
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- mouseReleased(MouseEvent) - Method in class org.coolmap.core.application.ui.util.JTableButtonCell
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- moveColumnMapToBottom(ColumnMap) - Method in class org.coolmap.core.canvas.CoolMapView
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- moveMapBy(float, float) - Method in class org.coolmap.core.canvas.CoolMapView
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shift map by some offsets
- moveMapTo(float, float) - Method in class org.coolmap.core.canvas.CoolMapView
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- moveRowMapToBottom(RowMap) - Method in class org.coolmap.core.canvas.CoolMapView
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- moveSideMapToBottom(SideMap) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
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- multiShift(T[], int, int[][], Class<T>) - Static method in class org.coolmap.core.util.MatrixUtils
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- multiShiftColNodes(int[][], int) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
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- multiShiftColumns(ArrayList<Range<Integer>>, int) - Method in class org.coolmap.core.data.CoolMapObject
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multi shift the column nodes
- multiShiftMatrix(T[][], int, int[][], Class<T>) - Static method in class org.coolmap.core.util.MatrixUtils
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- multiShiftRowNodes(int[][], int) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
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- multiShiftRows(ArrayList<Range<Integer>>, int) - Method in class org.coolmap.core.data.CoolMapObject
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