- OBJECT_CMATRIX_ID - Static variable in class org.coolmap.core.application.io.IOTerm
-
- OBJECT_CONTOLOGY_ID - Static variable in class org.coolmap.core.application.io.IOTerm
-
- OBJECT_COOLMAPOBJECT_ID - Static variable in class org.coolmap.core.application.io.IOTerm
-
- OBJECT_DATA_PROPERTY_TABLE_ID - Static variable in class org.coolmap.core.application.io.IOTerm
-
- OBJECT_STATESNAPSHOT_ID - Static variable in class org.coolmap.core.application.io.IOTerm
-
- onCancel() - Method in class org.coolmap.core.application.ui.object.CoolMapObjectPropertyDetailDialog
-
- onCancel() - Method in class org.coolmap.core.application.ui.ontology.ApplyOntologyToSideTreeDialog
-
- onCancel() - Method in class org.coolmap.core.application.ui.ontology.ExportOntologyDialog
-
- onCancel() - Method in class org.coolmap.core.application.ui.ontology.OntologyImportingDialog
-
- onCancel() - Method in class org.coolmap.core.application.ui.util.ConfirmOrCancelDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.filter.FilterConfigDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.object.CoolMapObjectPropertyDetailDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.object.DataImportingDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.object.SaveDataDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.ontology.ApplyOntologyToSideTreeDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.ontology.ExportOntologyDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.ontology.GenerateOntologyFromDataPropertyTableDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.ontology.MappingDataNodeToOntologyNodeDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.ontology.OntologyImportingDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.property.AddPropertyBasedAggregationDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.property.AssignContinuityTypeDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.property.HighlightPropertyToSidePanelDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.property.ImportDataPropertyTableDialog
-
- onConfirm() - Method in class org.coolmap.core.application.ui.util.ConfirmOrCancelDialog
-
- onlyImportFromSingleFile() - Method in interface org.coolmap.core.application.io.external.CoolMapObjectImporter
-
whether this importer supports import from multiple files or a single file
- onlyImportFromSingleFile() - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromGEOSOFT
-
- onlyImportFromSingleFile() - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromXLS
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor
-
- ontologyAdded(CoolMapOntologyImpl) - Method in interface org.coolmap.core.application.listeners.DataStorageListener
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer
-
- ontologyAdded(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup
-
- OntologyBrowser - Class in org.coolmap.core.application.widget.impl.ontology
-
- OntologyBrowser() - Constructor for class org.coolmap.core.application.widget.impl.ontology.OntologyBrowser
-
- OntologyBrowserActiveTermChangedListener - Interface in org.coolmap.core.application.widget.impl.ontology
-
- OntologyHelper - Class in org.coolmap.core.data.ontology.util
-
Created by Keqiang Li on 4/18/16.
- OntologyHelper() - Constructor for class org.coolmap.core.data.ontology.util.OntologyHelper
-
- OntologyImportingDialog - Class in org.coolmap.core.application.ui.ontology
-
Created by Keqiang Li on 4/12/16.
- OntologyImportingDialog(Window) - Constructor for class org.coolmap.core.application.ui.ontology.OntologyImportingDialog
-
- OntologyImportingPanel - Class in org.coolmap.core.application.ui.ontology
-
Created by Keqiang Li on 4/11/16.
- OntologyListener - Interface in org.coolmap.core.application.listeners
-
- OntologyMalformedException - Exception in org.coolmap.core.application.exception
-
Created by Keqiang Li on 4/11/16.
- OntologyMalformedException(String, Throwable) - Constructor for exception org.coolmap.core.application.exception.OntologyMalformedException
-
- ontologyNameChanged(CoolMapOntologyImpl) - Method in interface org.coolmap.core.application.listeners.OntologyListener
-
- ontologyNameChanged(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology
-
- OntologyPermutator - Class in org.coolmap.core.util
-
one way to create ontologies from column combinations
probably need the user to select certain levels in order to make the parsing work
generate |
- OntologyPermutator() - Constructor for class org.coolmap.core.util.OntologyPermutator
-
- OntologyProvider - Interface in org.coolmap.core.data.ontology
-
Created by Keqiang Li on 4/11/16.
- OntologySelectionPanel - Class in org.coolmap.core.application.ui.ontology
-
Created by Keqiang Li on 4/12/16.
- OntologySourceEnum - Enum in org.coolmap.core.data.ontology.util
-
Created by Keqiang Li on 4/13/16.
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in interface org.coolmap.core.application.listeners.DataStorageListener
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer
-
- ontologyToBeDestroyed(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup
-
- OptimizerModularity - Class in org.coolmap.core.util.network
-
Optimizer for a generalization of Newman and Girvan's Modularity measure,
for computing graph clusterings.
- OptimizerModularity() - Constructor for class org.coolmap.core.util.network.OptimizerModularity
-
- org.coolmap.core - package org.coolmap.core
-
- org.coolmap.core.api.aggregation - package org.coolmap.core.api.aggregation
-
- org.coolmap.core.api.aggregation.util - package org.coolmap.core.api.aggregation.util
-
- org.coolmap.core.api.data.matrix - package org.coolmap.core.api.data.matrix
-
- org.coolmap.core.api.data.ontology - package org.coolmap.core.api.data.ontology
-
- org.coolmap.core.api.io.data - package org.coolmap.core.api.io.data
-
- org.coolmap.core.api.io.ontology - package org.coolmap.core.api.io.ontology
-
- org.coolmap.core.api.util - package org.coolmap.core.api.util
-
- org.coolmap.core.application - package org.coolmap.core.application
-
- org.coolmap.core.application.exception - package org.coolmap.core.application.exception
-
- org.coolmap.core.application.io - package org.coolmap.core.application.io
-
- org.coolmap.core.application.io.external - package org.coolmap.core.application.io.external
-
- org.coolmap.core.application.io.internal.cmatrix - package org.coolmap.core.application.io.internal.cmatrix
-
- org.coolmap.core.application.io.internal.cmatrix.interfaces - package org.coolmap.core.application.io.internal.cmatrix.interfaces
-
- org.coolmap.core.application.io.internal.contology - package org.coolmap.core.application.io.internal.contology
-
- org.coolmap.core.application.io.internal.coolmapobject - package org.coolmap.core.application.io.internal.coolmapobject
-
- org.coolmap.core.application.io.internal.dataProperty - package org.coolmap.core.application.io.internal.dataProperty
-
- org.coolmap.core.application.listeners - package org.coolmap.core.application.listeners
-
- org.coolmap.core.application.plugin - package org.coolmap.core.application.plugin
-
- org.coolmap.core.application.state - package org.coolmap.core.application.state
-
- org.coolmap.core.application.ui.filter - package org.coolmap.core.application.ui.filter
-
- org.coolmap.core.application.ui.object - package org.coolmap.core.application.ui.object
-
- org.coolmap.core.application.ui.ontology - package org.coolmap.core.application.ui.ontology
-
- org.coolmap.core.application.ui.property - package org.coolmap.core.application.ui.property
-
- org.coolmap.core.application.ui.util - package org.coolmap.core.application.ui.util
-
- org.coolmap.core.application.utils - package org.coolmap.core.application.utils
-
- org.coolmap.core.application.utils.viewportActions - package org.coolmap.core.application.utils.viewportActions
-
- org.coolmap.core.application.widget - package org.coolmap.core.application.widget
-
- org.coolmap.core.application.widget.impl - package org.coolmap.core.application.widget.impl
-
- org.coolmap.core.application.widget.impl.console - package org.coolmap.core.application.widget.impl.console
-
- org.coolmap.core.application.widget.impl.ontology - package org.coolmap.core.application.widget.impl.ontology
-
- org.coolmap.core.application.widget.listener - package org.coolmap.core.application.widget.listener
-
- org.coolmap.core.canvas - package org.coolmap.core.canvas
-
- org.coolmap.core.canvas.action - package org.coolmap.core.canvas.action
-
- org.coolmap.core.canvas.listeners - package org.coolmap.core.canvas.listeners
-
- org.coolmap.core.canvas.renderer.impl - package org.coolmap.core.canvas.renderer.impl
-
- org.coolmap.core.canvas.renderer.model - package org.coolmap.core.canvas.renderer.model
-
- org.coolmap.core.canvas.ui - package org.coolmap.core.canvas.ui
-
- org.coolmap.core.canvas.ui.sidemaps - package org.coolmap.core.canvas.ui.sidemaps
-
- org.coolmap.core.canvas.ui.sidemaps.impl - package org.coolmap.core.canvas.ui.sidemaps.impl
-
- org.coolmap.core.canvas.ui.sidemaps.listener - package org.coolmap.core.canvas.ui.sidemaps.listener
-
- org.coolmap.core.canvas.ui.sidemaps.task - package org.coolmap.core.canvas.ui.sidemaps.task
-
- org.coolmap.core.canvas.ui.sidemaps.util - package org.coolmap.core.canvas.ui.sidemaps.util
-
- org.coolmap.core.canvas.ui.viewmaps - package org.coolmap.core.canvas.ui.viewmaps
-
- org.coolmap.core.data - package org.coolmap.core.data
-
- org.coolmap.core.data.action - package org.coolmap.core.data.action
-
- org.coolmap.core.data.aggregator - package org.coolmap.core.data.aggregator
-
- org.coolmap.core.data.aggregator.impl - package org.coolmap.core.data.aggregator.impl
-
- org.coolmap.core.data.annotation - package org.coolmap.core.data.annotation
-
- org.coolmap.core.data.cmatrix.impl - package org.coolmap.core.data.cmatrix.impl
-
- org.coolmap.core.data.cmatrix.model - package org.coolmap.core.data.cmatrix.model
-
- org.coolmap.core.data.cmatrixview.model - package org.coolmap.core.data.cmatrixview.model
-
- org.coolmap.core.data.cmatrixview.utils - package org.coolmap.core.data.cmatrixview.utils
-
- org.coolmap.core.data.entity.model - package org.coolmap.core.data.entity.model
-
- org.coolmap.core.data.entity.sampleProperty - package org.coolmap.core.data.entity.sampleProperty
-
- org.coolmap.core.data.entity.sampleProperty.action - package org.coolmap.core.data.entity.sampleProperty.action
-
- org.coolmap.core.data.entity.sampleProperty.model - package org.coolmap.core.data.entity.sampleProperty.model
-
- org.coolmap.core.data.entity.task - package org.coolmap.core.data.entity.task
-
- org.coolmap.core.data.listeners - package org.coolmap.core.data.listeners
-
- org.coolmap.core.data.ontology - package org.coolmap.core.data.ontology
-
- org.coolmap.core.data.ontology.model - package org.coolmap.core.data.ontology.model
-
- org.coolmap.core.data.ontology.util - package org.coolmap.core.data.ontology.util
-
- org.coolmap.core.data.ontology.util.edgeattributes - package org.coolmap.core.data.ontology.util.edgeattributes
-
- org.coolmap.core.data.snippet - package org.coolmap.core.data.snippet
-
- org.coolmap.core.data.state - package org.coolmap.core.data.state
-
- org.coolmap.core.data.state.misc - package org.coolmap.core.data.state.misc
-
- org.coolmap.core.util - package org.coolmap.core.util
-
- org.coolmap.core.util.bioparser - package org.coolmap.core.util.bioparser
-
- org.coolmap.core.util.bioparser.geosoft - package org.coolmap.core.util.bioparser.geosoft
-
- org.coolmap.core.util.bioparser.gseagmt - package org.coolmap.core.util.bioparser.gseagmt
-
- org.coolmap.core.util.bioparser.simpleobo - package org.coolmap.core.util.bioparser.simpleobo
-
- org.coolmap.core.util.filter - package org.coolmap.core.util.filter
-
- org.coolmap.core.util.filter.impl - package org.coolmap.core.util.filter.impl
-
- org.coolmap.core.util.filter.util - package org.coolmap.core.util.filter.util
-
- org.coolmap.core.util.graphics - package org.coolmap.core.util.graphics
-
- org.coolmap.core.util.network - package org.coolmap.core.util.network
-
- org.coolmap.core.util.statistics - package org.coolmap.core.util.statistics
-
- org.coolmap.core.util.statistics.test - package org.coolmap.core.util.statistics.test
-
- ORTHOGONAL - Static variable in interface org.coolmap.core.canvas.ui.sidemaps.SideTree
-
- OWLOrOBOFormatCoolMapOntologyImporter - Class in org.coolmap.core.application.io.internal.contology
-
Created by Keqiang Li on 4/11/16.
- OWLOrOBOFormatCoolMapOntologyImporter(File) - Constructor for class org.coolmap.core.application.io.internal.contology.OWLOrOBOFormatCoolMapOntologyImporter
-