A B C D E F G H I J L M N O P R S T U V W Z _

C

CAggregator<BASE,VIEW> - Class in org.coolmap.core.data.aggregator

CAggregator() - Constructor for class org.coolmap.core.data.aggregator.CAggregator

CAggregator(String, String, String, Class<BASE>, Class<VIEW>, CoolMapObject) - Constructor for class org.coolmap.core.data.aggregator.CAggregator

canAggregate(Class<?>) - Method in class org.coolmap.core.data.aggregator.CAggregator

canBeOverlaidTogether(CoolMapMatrix<T>) - Method in interface org.coolmap.core.api.data.matrix.CoolMapMatrix

Check if this data matrix can overlay with another data matrix

cancelAll() - Method in class org.coolmap.core.application.utils.TaskEngine

cancelcurrentTask() - Method in class org.coolmap.core.application.utils.TaskEngine

canConvert(Class) - Method in class org.coolmap.core.data.snippet.DoubleSnippet1_3

canConvert(Class) - Method in class org.coolmap.core.data.snippet.SnippetConverter

canFilter(Class<?>) - Method in class org.coolmap.core.util.filter.ColumnDoubleFilter

canFilter(Class<?>) - Method in interface org.coolmap.core.util.filter.Filter

canFilter(Class) - Method in class org.coolmap.core.util.filter.impl.CombinationFilter

canFilter(Class<?>) - Method in class org.coolmap.core.util.filter.RowDoubleFilter

canFilter(Class<?>) - Method in class org.coolmap.core.util.filter.ViewDoubleFilter

canFilter(Class<?>) - Method in class org.coolmap.core.util.filter.ViewFilter

CAnimator - Class in org.coolmap.core.util.graphics

CAnimator() - Constructor for class org.coolmap.core.util.graphics.CAnimator

canImport(TransferHandler.TransferSupport) - Method in class org.coolmap.core.application.ui.util.TableRowTransferHandler

canPass(int, int) - Method in class org.coolmap.core.data.CoolMapObject

canPass(CoolMapObject<?, VIEW>, int, int) - Method in interface org.coolmap.core.util.filter.Filter

canPass(CoolMapObject, int, int) - Method in class org.coolmap.core.util.filter.impl.CombinationFilter

canPass(CoolMapObject<?, Double>, int, int) - Method in class org.coolmap.core.util.filter.impl.ViewDoubleEqualFilter

canPass(CoolMapObject<?, Double>, int, int) - Method in class org.coolmap.core.util.filter.impl.ViewDoubleLargerOrEqualToFilter

canPass(CoolMapObject<?, Double>, int, int) - Method in class org.coolmap.core.util.filter.impl.ViewDoubleLargerThanFilter

canPass(CoolMapObject<?, Double>, int, int) - Method in class org.coolmap.core.util.filter.impl.ViewDoubleSmallerFilter

canPass(CoolMapObject<?, Double>, int, int) - Method in class org.coolmap.core.util.filter.impl.ViewDoubleSmallerOrEqualToFilter

canPass(CoolMapObject<?, VIEW>, int, int) - Method in class org.coolmap.core.util.filter.ViewFilter

CanProduceOntology - Interface in org.coolmap.core.data.ontology

Created by Keqiang Li on 4/11/16.

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

canRender(Class<?>) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

canRender(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

canRender(CoolMapObject) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

canvas - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

CanvasWidgetPropertyChangedListener - Class in org.coolmap.core.application.widget.listener

CanvasWidgetPropertyChangedListener() - Constructor for class org.coolmap.core.application.widget.listener.CanvasWidgetPropertyChangedListener

CascadeMapsAction - Class in org.coolmap.core.application.utils.viewportActions

CascadeMapsAction() - Constructor for class org.coolmap.core.application.utils.viewportActions.CascadeMapsAction

cascadeWindows() - Method in class org.coolmap.core.application.widget.impl.WidgetViewport

CategoricalValueAggregationMethod - Enum in org.coolmap.core.api.aggregation.util

Created by Keqiang Li on 5/20/16.

CategorizedDataProperty - Class in org.coolmap.core.data.entity.sampleProperty.model

CategorizedDataProperty(String, String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataProperty

CategorizedDataPropertyGroup<VALUE> - Class in org.coolmap.core.data.entity.sampleProperty.model

CategorizedDataPropertyGroup(String, String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataPropertyGroup

CategorizedDataPropertyGroup() - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataPropertyGroup

CategorizedDataPropertyGroupSetting<PROPERTY,VALUE> - Class in org.coolmap.core.data.entity.sampleProperty.model

CategorizedDataPropertyGroupSetting(PROPERTY) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataPropertyGroupSetting

centerColumns() - Method in class org.coolmap.core.canvas.CoolMapView

centerRows() - Method in class org.coolmap.core.canvas.CoolMapView

CenterSelectionAction - Class in org.coolmap.core.application.utils.viewportActions

CenterSelectionAction() - Constructor for class org.coolmap.core.application.utils.viewportActions.CenterSelectionAction

centerToColumn(VNode) - Method in class org.coolmap.core.canvas.CoolMapView

centerToNodes(VNode, VNode) - Method in class org.coolmap.core.canvas.CoolMapView

centerToPercentage(float, float) - Method in class org.coolmap.core.canvas.CoolMapView

centerToRegion(Rectangle) - Method in class org.coolmap.core.canvas.CoolMapView

centerToRow(VNode) - Method in class org.coolmap.core.canvas.CoolMapView

centerToSelections() - Method in class org.coolmap.core.canvas.CoolMapView

chooseSingleFile(String, String[]) - Static method in class org.coolmap.core.application.io.IOMaster

CImageGradient - Class in org.coolmap.core.util

CImageGradient(int) - Constructor for class org.coolmap.core.util.CImageGradient

CImageGradient.InterType - Enum in org.coolmap.core.util

clear() - Method in class org.coolmap.core.data.cmatrixview.utils.SortTracker

clear() - Method in class org.coolmap.core.data.entity.sampleProperty.model.DataPropertyGroupSetting

clear() - Method in class org.coolmap.core.data.ontology.model.COntologyAttribute

clear() - Method in class org.coolmap.core.util.bioparser.geosoft.Dataset

clear(String) - Method in class org.coolmap.core.util.bioparser.gseagmt.GmtEntry

clear() - Method in class org.coolmap.core.util.TableCache

clearAll() - Method in class org.coolmap.core.util.bioparser.gseagmt.GmtEntry

clearAllAnnotations() - Method in class org.coolmap.core.data.annotation.AnnotationStorage

clearAllStates() - Static method in class org.coolmap.core.application.state.StateStorageMaster

clearBaseCMatrices() - Method in class org.coolmap.core.data.CoolMapObject

clearBuffer() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

clearBuffers() - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

clearCachedResults() - Method in class org.coolmap.core.api.aggregation.SidePanelCategoricalValueAggregator

clearCachedResults() - Method in class org.coolmap.core.api.aggregation.SidePanelContinuousValueAggregator

clearCachedResults() - Method in interface org.coolmap.core.api.aggregation.SidePanelValueAggregator

clearColors() - Method in class org.coolmap.core.util.graphics.GradientEditorPanel

clearFilters() - Method in class org.coolmap.core.util.filter.impl.CombinationFilter

clearSelection() - Method in class org.coolmap.core.canvas.CoolMapView

clearSelection() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

clearSelection() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

clearSelection() - Method in interface org.coolmap.core.canvas.ui.sidemaps.Selectable

clearSideMaps() - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

clearSortedColumn() - Method in class org.coolmap.core.data.cmatrixview.utils.SortTracker

clearSortedRow() - Method in class org.coolmap.core.data.cmatrixview.utils.SortTracker

clearStates(CoolMapObject) - Static method in class org.coolmap.core.application.state.StateStorageMaster

clearSubtreeColor() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

clearSubtreeColor() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

clearSubtreeColor() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

clone() - Method in class org.coolmap.core.canvas.ui.MatrixCell

CMatrixAdaptor - Class in org.coolmap.core.application.listeners

CMatrixAdaptor() - Constructor for class org.coolmap.core.application.listeners.CMatrixAdaptor

CMatrixListener - Interface in org.coolmap.core.application.listeners

cmatrixNameChanged(CoolMapMatrix) - Method in class org.coolmap.core.application.listeners.CMatrixAdaptor

cmatrixNameChanged(CoolMapMatrix) - Method in interface org.coolmap.core.application.listeners.CMatrixListener

cmatrixNameChanged(CoolMapMatrix) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

cmatrixValueUpdated(CoolMapMatrix) - Method in class org.coolmap.core.application.listeners.CMatrixAdaptor

cmatrixValueUpdated(CoolMapMatrix) - Method in interface org.coolmap.core.application.listeners.CMatrixListener

cmatrixValueUpdated(CoolMapMatrix) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

CMConsole - Class in org.coolmap.core.application.widget.impl.console

CMConsole() - Constructor for class org.coolmap.core.application.widget.impl.console.CMConsole

CObjectAdaptor - Class in org.coolmap.core.data.listeners

CObjectAdaptor() - Constructor for class org.coolmap.core.data.listeners.CObjectAdaptor

CObjectListener - Interface in org.coolmap.core.data.listeners

CObjectStateStoreListener - Interface in org.coolmap.core.data.state

col - Variable in class org.coolmap.core.canvas.ui.MatrixCell

col(int) - Method in class org.coolmap.core.canvas.ui.MatrixCell

col(Integer) - Method in class org.coolmap.core.canvas.ui.MatrixCell

ColDrawer - Class in org.coolmap.core.canvas.ui

ColDrawer(Point, CoolMapView) - Constructor for class org.coolmap.core.canvas.ui.ColDrawer

colF(Float) - Method in class org.coolmap.core.canvas.ui.MatrixCell

collapse(List<VNode>) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.ColumnTreeNodeExpandingTaskImpl

collapse(List<VNode>) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.RowTreeNodeExpandingTaskImpl

collapse(List<VNode>) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask

collapseColumnNodes(Collection<VNode>, boolean) - Method in class org.coolmap.core.data.CoolMapObject

collapseColumnNodesOneLayer() - Method in class org.coolmap.core.data.CoolMapObject

collapseOneLevel() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

collapseOneLevel() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

collapseOneLevel() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

collapseRowNodes(Collection<VNode>, boolean) - Method in class org.coolmap.core.data.CoolMapObject

returns collapsed nodes

collapseRowNodesOneLayer() - Method in class org.coolmap.core.data.CoolMapObject

collapseSelectedNodes() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

collapseSelectedNodes() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

collapseSelectedNodes() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

collapseTreeColNodes(Collection<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

collapseTreeRowNodes(Collection<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

colorAKABENI - Static variable in class org.coolmap.core.util.graphics.UI

colorAncestors(Color) - Method in class org.coolmap.core.data.cmatrixview.model.VNode

colorBlack1 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlack2 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlack3 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlack4 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlack5 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlack6 - Static variable in class org.coolmap.core.util.graphics.UI

colorBlackShadow - Static variable in class org.coolmap.core.util.graphics.UI

colorChild() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

colorChild() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

colorChild() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

colorChild(Color) - Method in class org.coolmap.core.data.cmatrixview.model.VNode

colorDarkGreen1 - Static variable in class org.coolmap.core.util.graphics.UI

colorDirectBaseline - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey1 - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey2 - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey3 - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey4 - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey5 - Static variable in class org.coolmap.core.util.graphics.UI

colorGrey6 - Static variable in class org.coolmap.core.util.graphics.UI

colorHighlightLabelSibling - Static variable in class org.coolmap.core.util.graphics.UI

colorKAMENOZOKI - Static variable in class org.coolmap.core.util.graphics.UI

colorKARAKURENAI - Static variable in class org.coolmap.core.util.graphics.UI

colorKUCHINASHI - Static variable in class org.coolmap.core.util.graphics.UI

ColorLabel - Class in org.coolmap.core.util

ColorLabel(Color) - Constructor for class org.coolmap.core.util.ColorLabel

colorLightBlue0 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightBlue1 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen0 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen1 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen2 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen4 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen5 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightGreen6 - Static variable in class org.coolmap.core.util.graphics.UI

colorLightPink - Static variable in class org.coolmap.core.util.graphics.UI

colorLightRed - Static variable in class org.coolmap.core.util.graphics.UI

colorLightYellow - Static variable in class org.coolmap.core.util.graphics.UI

colorMIDORI - Static variable in class org.coolmap.core.util.graphics.UI

colorMIZU - Static variable in class org.coolmap.core.util.graphics.UI

colorNAE - Static variable in class org.coolmap.core.util.graphics.UI

colorOrange0 - Static variable in class org.coolmap.core.util.graphics.UI

colorOrange1 - Static variable in class org.coolmap.core.util.graphics.UI

colorOrange2 - Static variable in class org.coolmap.core.util.graphics.UI

colorPink - Static variable in class org.coolmap.core.util.graphics.UI

colorRedWarning - Static variable in class org.coolmap.core.util.graphics.UI

colorRURI - Static variable in class org.coolmap.core.util.graphics.UI

colorSHOJYOHI - Static variable in class org.coolmap.core.util.graphics.UI

colorSubtree() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

colorSubtree() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

colorSubtree() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

colorTOKIWA - Static variable in class org.coolmap.core.util.graphics.UI

colorTONOKO - Static variable in class org.coolmap.core.util.graphics.UI

colorTSUYUKUSA - Static variable in class org.coolmap.core.util.graphics.UI

colorUSUKI - Static variable in class org.coolmap.core.util.graphics.UI

colorWhite - Static variable in class org.coolmap.core.util.graphics.UI

colRowDimensions - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

COLUMN - Static variable in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

ColumnDoubleEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/4/16.

ColumnDoubleEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.ColumnDoubleEqualFilter

ColumnDoubleFilter - Class in org.coolmap.core.util.filter

Created by Keqiang Li on 3/4/16.

ColumnDoubleFilter(int, Double) - Constructor for class org.coolmap.core.util.filter.ColumnDoubleFilter

ColumnDoubleLargerFilter - Class in org.coolmap.core.util.filter.impl

ColumnDoubleLargerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.ColumnDoubleLargerFilter

ColumnDoubleLargerOrEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

ColumnDoubleLargerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.ColumnDoubleLargerOrEqualFilter

ColumnDoubleSmallerFilter - Class in org.coolmap.core.util.filter.impl

ColumnDoubleSmallerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.ColumnDoubleSmallerFilter

ColumnDoubleSmallerOrEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

ColumnDoubleSmallerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.ColumnDoubleSmallerOrEqualFilter

ColumnHighlighter<VIEW> - Class in org.coolmap.core.canvas.ui.sidemaps.impl

ColumnHighlighter(String, CoolMapObject, IdToSidePanelDisplayConverter) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

ColumnLabels - Class in org.coolmap.core.canvas.ui.sidemaps.impl

ColumnLabels(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

ColumnMap<BASE,VIEW> - Class in org.coolmap.core.canvas.ui.sidemaps

ColumnMap(CoolMapObject<BASE, VIEW>, String) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.ColumnMap

ColumnPropertyBasedDoubleAggregation - Class in org.coolmap.core.data.aggregator

Created by Keqiang Li on 3/21/16.

ColumnPropertyBasedDoubleAggregation(CoolMapObject, DataPropertyTable, String, CAggregator) - Constructor for class org.coolmap.core.data.aggregator.ColumnPropertyBasedDoubleAggregation

columnsChanged(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel

columnsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation

columnsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSearch

columnsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

columnsChanged(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

columnsChanged(CoolMapObject) - Method in class org.coolmap.core.data.listeners.CObjectAdaptor

columnsChanged(CoolMapObject) - Method in interface org.coolmap.core.data.listeners.CObjectListener

ColumnTree - Class in org.coolmap.core.canvas.ui.sidemaps.impl

ColumnTree(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

ColumnTreeNodeExpandingTaskImpl - Class in org.coolmap.core.canvas.ui.sidemaps.task

ColumnTreeNodeExpandingTaskImpl(List<VNode>, Map<VNode, Set<String>>, long, CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.task.ColumnTreeNodeExpandingTaskImpl

CombinationFilter<VIEW> - Class in org.coolmap.core.util.filter.impl

CombinationFilter() - Constructor for class org.coolmap.core.util.filter.impl.CombinationFilter

CombinationFilterMode - Enum in org.coolmap.core.util.filter

Created by Keqiang Li on 4/4/16.

comma - Static variable in class org.coolmap.core.util.graphics.UI

compare(VNode, VNode) - Method in class org.coolmap.core.data.cmatrixview.utils.VNodeComparator

compare(VNode, VNode) - Method in class org.coolmap.core.data.cmatrixview.utils.VNodeHeightComparator

compare(VNode, VNode) - Method in class org.coolmap.core.data.cmatrixview.utils.VNodeIndexComparator

compare(VNode, VNode) - Method in class org.coolmap.core.data.cmatrixview.utils.VNodeNameComparator

compare(CoolMapOntologyImpl, CoolMapOntologyImpl) - Method in class org.coolmap.core.data.ontology.util.COntologyComparator

compare(Range<Integer>, Range<Integer>) - Method in class org.coolmap.core.util.RangeComparator

all ranges here are in the form of closed-open type

compareTo(PointAnnotation) - Method in class org.coolmap.core.data.annotation.PointAnnotation

componentHidden(ComponentEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

componentMoved(ComponentEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

componentResized(ComponentEvent) - Method in class org.coolmap.core.canvas.ui.ColDrawer

componentResized(ComponentEvent) - Method in class org.coolmap.core.canvas.ui.RowDrawer

componentShown(ComponentEvent) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

configure(File...) - Method in interface org.coolmap.core.application.io.external.CoolMapObjectImporter

configure the importer before actually running the import task

configure(File...) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromGEOSOFT

configure(File...) - Method in class org.coolmap.core.application.io.external.CoolMapObjectImporterFromXLS

confineToValidCell(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.MatrixCell

ConfirmOrCancelDialog - Class in org.coolmap.core.application.ui.util

Created by Keqiang Li on 4/13/16.

ConfirmOrCancelDialog(Window, String, String, boolean) - Constructor for class org.coolmap.core.application.ui.util.ConfirmOrCancelDialog

ConfirmOrCancelDialog(Window, boolean) - Constructor for class org.coolmap.core.application.ui.util.ConfirmOrCancelDialog

contains(VALUE) - Method in class org.coolmap.core.data.entity.sampleProperty.model.CategorizedDataPropertyGroup

contains(Double) - Method in class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataPropertyGroup

contains(VALUE) - Method in class org.coolmap.core.data.entity.sampleProperty.model.DataPropertyGroup

contains(String, String) - Method in class org.coolmap.core.util.TableCache

containsAttribute(String) - Method in class org.coolmap.core.data.ontology.model.COntologyAttribute

containsNode(String) - Method in class org.coolmap.core.data.ontology.model.COntologyAttribute

contentPane - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle

ContinuousDataProperty - Class in org.coolmap.core.data.entity.sampleProperty.model

ContinuousDataProperty(String, double) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataProperty

ContinuousDataPropertyGroup - Class in org.coolmap.core.data.entity.sampleProperty.model

ContinuousDataPropertyGroup(String, double, double) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataPropertyGroup

ContinuousDataPropertyGroupSetting<PROPERTY> - Class in org.coolmap.core.data.entity.sampleProperty.model

ContinuousDataPropertyGroupSetting(PROPERTY, double, double) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataPropertyGroupSetting

ContinuousDataPropertyGroupSetting(PROPERTY) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.ContinuousDataPropertyGroupSetting

ContinuousValueAggregationMethod - Enum in org.coolmap.core.api.aggregation.util

Created by Keqiang Li on 5/9/16.

COntologyAttribute - Class in org.coolmap.core.data.ontology.model

COntologyAttribute() - Constructor for class org.coolmap.core.data.ontology.model.COntologyAttribute

COntologyComparator - Class in org.coolmap.core.data.ontology.util

COntologyComparator() - Constructor for class org.coolmap.core.data.ontology.util.COntologyComparator

COntologyEdgeAttributeImpl - Class in org.coolmap.core.data.ontology.util.edgeattributes

COntologyEdgeAttributeImpl(float) - Constructor for class org.coolmap.core.data.ontology.util.edgeattributes.COntologyEdgeAttributeImpl

COntologyPreset - Class in org.coolmap.core.data.ontology.model

COntologyPreset(String, String, Collection<String>, Collection<Integer>) - Constructor for class org.coolmap.core.data.ontology.model.COntologyPreset

COntologyUtils - Class in org.coolmap.core.data.ontology.util

COntologyUtils() - Constructor for class org.coolmap.core.data.ontology.util.COntologyUtils

convert(Object) - Method in class org.coolmap.core.data.snippet.DoubleSnippet1_3

convert(Object) - Method in class org.coolmap.core.data.snippet.SnippetConverter

convertNodeRegionToViewRegion(Set<Rectangle>) - Method in class org.coolmap.core.canvas.CoolMapView

converts rectangles from node selection regions, to view plotting regions, anchored at 0,0

convertOntologyTo2ColumnLines(CoolMapOntologyImpl) - Static method in class org.coolmap.core.data.ontology.util.OntologyHelper

A function to convert a ontology to parent-child format(simple two column)

convertOntologyToOBOLines(CoolMapOntologyImpl) - Static method in class org.coolmap.core.data.ontology.util.OntologyHelper

convertViewToDouble(Object[][]) - Static method in class org.coolmap.core.util.Tools

CoolMap - Class in org.coolmap.core

CoolMap() - Constructor for class org.coolmap.core.CoolMap

COOLMAP_DIRECTORY - Static variable in class org.coolmap.core.util.CoolMapConfig

CoolMapConfig - Class in org.coolmap.core.util

CoolMapConfig() - Constructor for class org.coolmap.core.util.CoolMapConfig

CoolMapDataUtil - Class in org.coolmap.core.util.statistics

CoolMapDataUtil() - Constructor for class org.coolmap.core.util.statistics.CoolMapDataUtil

CoolMapDoubleMatrix - Class in org.coolmap.core.util

CoolMapDoubleMatrix(String, List<String>, List<String>, double[][]) - Constructor for class org.coolmap.core.util.CoolMapDoubleMatrix

CoolMapLayer<BASE,VIEW> - Class in org.coolmap.core.canvas.ui.viewmaps

CoolMapLayer(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.viewmaps.CoolMapLayer

CoolMapMainFrame - Class in org.coolmap.core.application

CoolMapMaster - Class in org.coolmap.core.application

CoolMapMatrix<T> - Interface in org.coolmap.core.api.data.matrix

This class serves the purpose of storing the underlying data matrix.

CoolMapMatrixImporter<T> - Interface in org.coolmap.core.api.io.data

Created by Keqiang Li on 2/14/17.

CoolMapObject<BASE,VIEW> - Class in org.coolmap.core.data

CoolMapObject() - Constructor for class org.coolmap.core.data.CoolMapObject

CoolMapObject(String) - Constructor for class org.coolmap.core.data.CoolMapObject

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor

coolMapObjectAdded(CoolMapObject) - Method in interface org.coolmap.core.application.listeners.DataStorageListener

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

coolMapObjectAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSearch

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in class org.coolmap.core.data.listeners.CObjectAdaptor

coolMapObjectBaseMatrixChanged(CoolMapObject) - Method in interface org.coolmap.core.data.listeners.CObjectListener

CoolMapObjectImporter - Interface in org.coolmap.core.application.io.external

CoolMapObjectImporterFromGEOSOFT - Class in org.coolmap.core.application.io.external

CoolMapObjectImporterFromGEOSOFT() - Constructor for class org.coolmap.core.application.io.external.CoolMapObjectImporterFromGEOSOFT

CoolMapObjectImporterFromXLS - Class in org.coolmap.core.application.io.external

CoolMapObjectImporterFromXLS() - Constructor for class org.coolmap.core.application.io.external.CoolMapObjectImporterFromXLS

CoolMapObjectPropertyDetailDialog - Class in org.coolmap.core.application.ui.object

Created by Keqiang Li on 4/15/16.

CoolMapObjectPropertyDetailDialog(Window, CoolMapObject) - Constructor for class org.coolmap.core.application.ui.object.CoolMapObjectPropertyDetailDialog

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor

coolMapObjectToBeDestroyed(CoolMapObject) - Method in interface org.coolmap.core.application.listeners.DataStorageListener

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

coolMapObjectToBeDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup

CoolMapOntology - Interface in org.coolmap.core.api.data.ontology

This class serves the purpose of holding an Ontology structure.

CoolMapOntologyFileFormatEnum - Enum in org.coolmap.core.data.ontology

Created by Keqiang Li on 4/11/16.

CoolMapOntologyImpl - Class in org.coolmap.core.data.ontology.model

CoolMapOntologyImpl(String, String) - Constructor for class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

CoolMapOntologyImpl(String, String, String) - Constructor for class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

CoolMapOntologyImporter - Interface in org.coolmap.core.api.io.ontology

An interface used to import Ontology from any source Created by Keqiang Li on 4/11/16.

CoolMapPlugin - Interface in org.coolmap.core.application.plugin

CoolMapSplashScreen - Class in org.coolmap.core.util

CoolMapSplashScreen() - Constructor for class org.coolmap.core.util.CoolMapSplashScreen

CoolMapState - Class in org.coolmap.core.data.state

CoolMapView<BASE,VIEW> - Class in org.coolmap.core.canvas

CoolMapView(CoolMapObject<BASE, VIEW>) - Constructor for class org.coolmap.core.canvas.CoolMapView

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor

coolMapViewAdded(CoolMapObject) - Method in interface org.coolmap.core.application.listeners.DataStorageListener

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

coolMapViewAdded(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.listeners.DataStorageAdaptor

coolMapViewDestroyed(CoolMapObject) - Method in interface org.coolmap.core.application.listeners.DataStorageListener

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.state.AdditionalStateTrackers

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.ontology.WidgetOntology

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetCMatrix

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

coolMapViewDestroyed(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup

CopyMatrixFromSelectedRegionAction - Class in org.coolmap.core.canvas.action

CopyMatrixFromSelectedRegionAction(boolean) - Constructor for class org.coolmap.core.canvas.action.CopyMatrixFromSelectedRegionAction

CopyMatrixFromWholeViewAction - Class in org.coolmap.core.canvas.action

CopyMatrixFromWholeViewAction(boolean) - Constructor for class org.coolmap.core.canvas.action.CopyMatrixFromWholeViewAction

copySelectedMatrixAsNumericMatrixWithLeaf(CoolMapObject, String) - Static method in class org.coolmap.core.util.statistics.CoolMapDataUtil

copySelectedMatrixAsNumericMatrixWithoutLeaf(CoolMapObject, String) - Static method in class org.coolmap.core.util.statistics.CoolMapDataUtil

copyWholeMatrixAsNumericMatrixWithLeaf(String) - Static method in class org.coolmap.core.util.statistics.CoolMapDataUtil

copyWholeMatrixAsNumericMatrixWithoutLeaf(String) - Static method in class org.coolmap.core.util.statistics.CoolMapDataUtil

createFromCoolMapObject(CoolMapObject, boolean) - Static method in class org.coolmap.core.util.CoolMapDoubleMatrix

createFromStateConfig(String, CoolMapObject, CoolMapState) - Static method in class org.coolmap.core.data.state.CoolMapState

create a coolmapstate from a coolmapobject, jusing parameters from another state

createInstance(TimingTarget, int) - Static method in class org.coolmap.core.util.graphics.CAnimator

createJLabel(String, Icon, String, Border) - Static method in class org.coolmap.core.util.Tools

createNewCoolMapObject(CoolMapMatrix) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithPropertyBasedAggregationTask

createNewView(CoolMapMatrix) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithColumnPropertyBasedAggregationTask

createNewView(CoolMapMatrix) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithPropertyBasedAggregationTask

createNewView(CoolMapMatrix) - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithRowPropertyBasedAggregationTask

createNodeFromJSON(JSONObject) - Static method in class org.coolmap.core.application.io.internal.coolmapobject.InternalCoolMapObjectIO

createRangesFromIndices(ArrayList<Integer>) - Static method in class org.coolmap.core.util.Tools

createSampleColOntology() - Static method in class org.coolmap.core.data.ontology.util.COntologyUtils

createSampleLoopOntology() - Static method in class org.coolmap.core.data.ontology.util.COntologyUtils

createSampleOntology() - Static method in class org.coolmap.core.data.ontology.util.COntologyUtils

createSampleRowOntology() - Static method in class org.coolmap.core.data.ontology.util.COntologyUtils

createState(String, CoolMapObject, JSONObject) - Static method in class org.coolmap.core.data.state.CoolMapState

create a state that stores rows, columns and selections,

createStringImage(Graphics, String) - Static method in class org.coolmap.core.util.Tools

createToolTipFromJLabel(JLabel) - Static method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

createToolTipFromString(String, Font) - Static method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

createTransferable(JComponent) - Method in class org.coolmap.core.application.ui.util.TableRowTransferHandler

CURVE - Static variable in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

CViewAdaptor - Class in org.coolmap.core.canvas.listeners

CViewAdaptor() - Constructor for class org.coolmap.core.canvas.listeners.CViewAdaptor

CViewListener - Interface in org.coolmap.core.canvas.listeners

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