A B C D E F G H I J L M N O P R S T U V W Z _

R

randomColor() - Static method in class org.coolmap.core.util.graphics.UI

randomHSBColorLight() - Static method in class org.coolmap.core.util.graphics.UI

randomID() - Static method in class org.coolmap.core.util.Tools

RangeComparator - Class in org.coolmap.core.util

all ranges here must all be closed - open type

RangeComparator() - Constructor for class org.coolmap.core.util.RangeComparator

rangeDivide(Integer, Integer, Integer) - Static method in class org.coolmap.core.util.MatrixUtils

rawCopy(String, String) - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

Copy an ontology with only the parent-child relationships and the attribute information without depth

recomputeLayout(int) - Method in class org.coolmap.core.util.network.LNetwork

redo() - Method in class org.coolmap.core.application.state.StateQueue

redo(CoolMapObject) - Static method in class org.coolmap.core.application.state.StateStorageMaster

RedoAction - Class in org.coolmap.core.application.state

RedoAction() - Constructor for class org.coolmap.core.application.state.RedoAction

redrawCanvas() - Method in class org.coolmap.core.canvas.CoolMapView

repaint the entire canvas area

refresh() - Method in class org.coolmap.core.data.cmatrixview.model.VNode

need to be called if ontologies were changed since

registerAggregator(String) - Method in class org.coolmap.core.application.widget.impl.WidgetAggregator

registerViewRenderer(Class) - Method in class org.coolmap.core.application.widget.impl.WidgetViewRenderer

removeActiveColNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

removeActiveColNodes() - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

removeActiveRowNodes() - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

removeActiveRowNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

This is dangerous...

removeAll() - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

removeAnnotation(VNode, VNode) - Method in class org.coolmap.core.data.annotation.AnnotationStorage

removeBaseCMatrix(CoolMapMatrix<BASE>) - Method in class org.coolmap.core.data.CoolMapObject

removeChildCoolMapObject(CoolMapObject) - Method in class org.coolmap.core.data.CoolMapObject

removeChildNode(VNode) - Method in class org.coolmap.core.data.cmatrixview.model.VNode

removeCMatrices(List<CoolMapMatrix<BASE>>) - Method in class org.coolmap.core.data.CoolMapObject

removeCObjectListener(CObjectListener) - Method in class org.coolmap.core.data.CoolMapObject

removeColumnMap(SideMap) - Method in class org.coolmap.core.canvas.CoolMapView

removeCViewListener(CViewListener) - Method in class org.coolmap.core.canvas.CoolMapView

removeDataPropertyTable(DataPropertyTable) - Static method in class org.coolmap.core.application.CoolMapMaster

removeFileExtension(String) - Static method in class org.coolmap.core.util.Tools

removeFilter(ViewFilter) - Method in class org.coolmap.core.util.filter.impl.CombinationFilter

removeFromSelected(VNode) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

removeFromSelected(VNode) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

removeFromSelected(T) - Method in interface org.coolmap.core.canvas.ui.sidemaps.Selectable

removeHeaderRelatedUIs() - Method in class org.coolmap.core.application.ui.util.DelimitedFilePreviewPanel

removeOnology(CoolMapOntologyImpl) - Static method in class org.coolmap.core.application.CoolMapMaster

removeOntology() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

removeOntology() - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

removeOntology() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

removeRowMap(SideMap) - Method in class org.coolmap.core.canvas.CoolMapView

removeSideMap(SideMap) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer

removeViewNodesColumn(Collection<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

only removes nodes without a parent.

removeViewNodesRow(Collection<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

remove nodes from row.

RenameActiveCoolMapObjectAction - Class in org.coolmap.core.data.action

RenameActiveCoolMapObjectAction() - Constructor for class org.coolmap.core.data.action.RenameActiveCoolMapObjectAction

renameCMatrix(String, String) - Static method in class org.coolmap.core.application.CoolMapMaster

renameCOntology(String, String) - Static method in class org.coolmap.core.application.CoolMapMaster

RenameCoolMapObjectAction - Class in org.coolmap.core.data.action

RenameCoolMapObjectAction(String, CoolMapObject) - Constructor for class org.coolmap.core.data.action.RenameCoolMapObjectAction

render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.ColumnMap

render the map whenever needed actually, it's better to separate the render by column.

render(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

render(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.RowMap

render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.viewmaps.CoolMapLayer

render(Graphics2D, CoolMapObject<Object, Object>, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.viewmaps.FilterLayer

render(Graphics2D, CoolMapObject<BASE, VIEW>, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.viewmaps.MapLayer

render the sub region of coolMapObject into [minRow, minCol, maxRow, maxCol) from 0,0 to width, height, with the minRow maxRow minCol maxCol

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries

renderCellHD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

renderCellHD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

renderCellHD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries

renderCellLD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

renderCellLD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

renderCellLD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToLine

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSeries

renderCellSD(Double, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

renderCellSD(Object, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

renderCellSD(VIEW, VNode, VNode, Graphics2D, int, int, int, int) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

renderColumn(Graphics2D, CoolMapObject<BASE, VIEW>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.ColumnMap

renderColumn(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

renderColumn(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

renderColumn(Graphics2D, CoolMapObject, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

renderExternalValues(List<String>, List<Double>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

renderExternalValues(List<String>, List<Object>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

renderExternalValues(List<String>, List<VIEW>, Graphics2D) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

renderLine(Graphics2D, int, int, int, int, float, Color) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

renderLine(Graphics2D, int, int, int, int, float, Color) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

renderLine(Graphics2D, int, int, int, int, float, Color) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

renderRow(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

renderRow(Graphics2D, CoolMapObject<Object, Object>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

renderRow(Graphics2D, CoolMapObject, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

renderRow(Graphics2D, CoolMapObject<BASE, VIEW>, VNode, int, int, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.RowMap

renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

renderTreeNodes(Graphics2D, CoolMapObject, int, int, int, int, float, float, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideTree

reorder(int, int) - Method in interface org.coolmap.core.api.util.Reorderable

Reorderable - Interface in org.coolmap.core.api.util

Created by Keqiang Li on 4/23/16.

reorderColumn(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

reorderRow(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

repeat(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerContainerToggle

repeat(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerToggle

replaceColumnNodes(List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

replaceRowNodes(List<VNode>, List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject

This method is only used to remove nodes, but the treenodes are kept

reset() - Method in class org.coolmap.core.util.CImageGradient

resetNodeWidth() - Method in class org.coolmap.core.canvas.CoolMapView

reset the width and height of view nodes

resetNodeWidthColumn() - Method in class org.coolmap.core.canvas.CoolMapView

resetNodeWidthRow() - Method in class org.coolmap.core.canvas.CoolMapView

resetViewMultiplier() - Method in class org.coolmap.core.data.cmatrixview.model.VNode

restoreCoolMapObjectState(CoolMapObject, TFile) - Static method in class org.coolmap.core.application.io.internal.coolmapobject.InternalCoolMapObjectIO

restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.impl.console.WidgetConsole

restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.impl.WidgetUserGroup

restoreState(JSONObject) - Method in class org.coolmap.core.application.widget.Widget

restoreState(JSONObject) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

restoreState(JSONObject) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

override this to make this restorable

restoreState(JSONObject) - Method in class org.coolmap.core.data.aggregator.CAggregator

restoreState(CoolMapState) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix

restoreState(CoolMapState) - Method in class org.coolmap.core.data.CoolMapObject

The state can be restored from a previously saved This state also must contain

restoreState(JSONObject) - Method in class org.coolmap.core.data.snippet.SnippetConverter

restoreState(JSONObject) - Method in interface org.coolmap.core.util.StateSavable

state can be restored from JSON

resume() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask

reverse(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerContainerToggle

reverse(Animator) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.TargetDrawerToggle

row - Variable in class org.coolmap.core.canvas.ui.MatrixCell

row(int) - Method in class org.coolmap.core.canvas.ui.MatrixCell

row(Integer) - Method in class org.coolmap.core.canvas.ui.MatrixCell

ROW - Static variable in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl

RowDoubleEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/4/16.

RowDoubleEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleEqualFilter

RowDoubleFilter - Class in org.coolmap.core.util.filter

Created by Keqiang Li on 3/4/16.

RowDoubleFilter(int, Double) - Constructor for class org.coolmap.core.util.filter.RowDoubleFilter

RowDoubleLargerFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

RowDoubleLargerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleLargerFilter

RowDoubleLargerOrEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

RowDoubleLargerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleLargerOrEqualFilter

RowDoubleSmallerFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

RowDoubleSmallerFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleSmallerFilter

RowDoubleSmallerOrEqualFilter - Class in org.coolmap.core.util.filter.impl

Created by Keqiang Li on 3/2/16.

RowDoubleSmallerOrEqualFilter(int, double) - Constructor for class org.coolmap.core.util.filter.impl.RowDoubleSmallerOrEqualFilter

RowDrawer - Class in org.coolmap.core.canvas.ui

RowDrawer(Point, CoolMapView) - Constructor for class org.coolmap.core.canvas.ui.RowDrawer

rowF(Float) - Method in class org.coolmap.core.canvas.ui.MatrixCell

RowHighlighter<VALUE> - Class in org.coolmap.core.canvas.ui.sidemaps.impl

RowHighlighter(String, CoolMapObject, IdToSidePanelDisplayConverter<VALUE>) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

RowLabels - Class in org.coolmap.core.canvas.ui.sidemaps.impl

RowLabels() - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

RowLabels(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

RowMap<BASE,VIEW> - Class in org.coolmap.core.canvas.ui.sidemaps

RowMap(CoolMapObject<BASE, VIEW>, String) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.RowMap

RowPropertyBasedAggregation<T> - Class in org.coolmap.core.data.aggregator

Created by Keqiang Li on 3/21/16.

RowPropertyBasedAggregation(CoolMapObject, DataPropertyTable, String) - Constructor for class org.coolmap.core.data.aggregator.RowPropertyBasedAggregation

RowPropertyBasedDoubleAggregation - Class in org.coolmap.core.data.aggregator

Created by Keqiang Li on 3/21/16.

RowPropertyBasedDoubleAggregation(CoolMapObject, DataPropertyTable, String, CAggregator) - Constructor for class org.coolmap.core.data.aggregator.RowPropertyBasedDoubleAggregation

rowsChanged(CoolMapObject) - Method in enum org.coolmap.core.application.utils.ActiveCoolMapObjectListenerTunnel

rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetPointAnnotation

rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSearch

rowsChanged(CoolMapObject) - Method in class org.coolmap.core.application.widget.impl.WidgetSyncer

rowsChanged(CoolMapObject) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

rowsChanged(CoolMapObject) - Method in class org.coolmap.core.data.listeners.CObjectAdaptor

rowsChanged(CoolMapObject) - Method in interface org.coolmap.core.data.listeners.CObjectListener

RowTree - Class in org.coolmap.core.canvas.ui.sidemaps.impl

RowTree(CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

RowTreeNodeExpandingTaskImpl - Class in org.coolmap.core.canvas.ui.sidemaps.task

RowTreeNodeExpandingTaskImpl(List<VNode>, Map<VNode, Set<String>>, long, CoolMapObject) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.task.RowTreeNodeExpandingTaskImpl

run() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.NewViewWithPropertyBasedAggregationTask

run() - Method in class org.coolmap.core.data.entity.task.GenerateOntologyBaseOnSamplePropertyTask

run() - Method in class org.coolmap.core.data.entity.task.ImportingDataPropertyTableTask

A B C D E F G H I J L M N O P R S T U V W Z _