A B C D E F G H I J L M N O P R S T U V W Z _

P

paintComponent(Graphics) - Method in class org.coolmap.core.canvas.ui.HighlightLayer

paintComponent(Graphics) - Method in class org.coolmap.core.canvas.ui.ProgressMask

paintComponent(Graphics) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle

paintComponent(Graphics) - Method in class org.coolmap.core.util.ColorLabel

paintLabel(Graphics2D, BufferedImage, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle

parse(File) - Static method in class org.coolmap.core.util.bioparser.geosoft.GeoSOFT

parse(String, GmtEntry.ID_TYPE, InputStream) - Static method in class org.coolmap.core.util.bioparser.gseagmt.GmtEntry

parse from input stream

parse(InputStream) - Static method in class org.coolmap.core.util.bioparser.gseagmt.GmtEntry

parse(String, InputStream) - Static method in class org.coolmap.core.util.bioparser.simpleobo.SimpleOBOTree

parse(ArrayList<String[]>, String[]) - Static method in class org.coolmap.core.util.OntologyPermutator

parseFromPropertyTable(File) - Static method in class org.coolmap.core.canvas.ui.sidemaps.util.SideTreeUtil

PassThrough - Class in org.coolmap.core.data.aggregator.impl

PassThrough() - Constructor for class org.coolmap.core.data.aggregator.impl.PassThrough

PasteColumnNodesAction - Class in org.coolmap.core.canvas.action

PasteColumnNodesAction() - Constructor for class org.coolmap.core.canvas.action.PasteColumnNodesAction

PasteRowNodesAction - Class in org.coolmap.core.canvas.action

PasteRowNodesAction() - Constructor for class org.coolmap.core.canvas.action.PasteRowNodesAction

pause() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask

PLUGIN_DIRECTORY - Static variable in class org.coolmap.core.util.CoolMapConfig

PluginMaster - Class in org.coolmap.core.application.plugin

PluginMaster() - Constructor for class org.coolmap.core.application.plugin.PluginMaster

PointAnnotation - Class in org.coolmap.core.data.annotation

PointAnnotation(VNode, VNode, String) - Constructor for class org.coolmap.core.data.annotation.PointAnnotation

postPaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

postPaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

postPaint(Graphics2D, CoolMapObject, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

postPaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

postPaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

postPaint(Graphics2D, CoolMapObject, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

postPaint(Graphics2D, CoolMapObject<BASE, VIEW>, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

postRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

preferredLayoutSize(Container) - Method in class org.coolmap.core.application.ui.util.DynamicResizedCardLayout

prePaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

prePaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

prePaint(Graphics2D, CoolMapObject, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

prePaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

prePaint(Graphics2D, CoolMapObject<Object, Object>, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

prePaint(Graphics2D, CoolMapObject, int, int) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

prePaint(Graphics2D, CoolMapObject<BASE, VIEW>, int, int) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

prepareDesync() - Method in class org.coolmap.core.data.CoolMapObject

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

prepareGraphics(Graphics2D) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnHighlighter

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnLabels

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.ColumnTree

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowHighlighter

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowLabels

prepareRender(Graphics2D) - Method in class org.coolmap.core.canvas.ui.sidemaps.impl.RowTree

prepareRender(Graphics2D) - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap

prepareSync() - Method in class org.coolmap.core.data.CoolMapObject

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBar

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToBoxPlot

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToColor

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.NumberToSortedBar

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.impl.TextRenderer

preRender(int, int, int, int, float, float) - Method in class org.coolmap.core.canvas.renderer.model.ViewRenderer

previous() - Method in class org.coolmap.core.canvas.ui.sidemaps.task.SideTreeNodeExpandingTask

print() - Method in class org.coolmap.core.util.bioparser.simpleobo.SimpleOBOEntry

printAttribute() - Method in class org.coolmap.core.util.bioparser.geosoft.ArrayTable

printBranches() - Method in class org.coolmap.core.util.bioparser.simpleobo.SimpleOBOTree

printContents() - Method in class org.coolmap.core.util.bioparser.geosoft.GeoSOFT

printData() - Method in class org.coolmap.core.util.bioparser.geosoft.ArrayTable

printDetails() - Method in class org.coolmap.core.util.bioparser.geosoft.Database

printDetails() - Method in class org.coolmap.core.util.bioparser.geosoft.Dataset

printDetails() - Method in class org.coolmap.core.util.bioparser.geosoft.Subset

printEntries() - Method in class org.coolmap.core.util.bioparser.simpleobo.SimpleOBOTree

printMapping() - Method in class org.coolmap.core.util.bioparser.geosoft.ArrayTable

printMatrix() - Method in class org.coolmap.core.util.CoolMapDoubleMatrix

printMatrix(Object[][]) - Static method in class org.coolmap.core.util.MatrixUtils

printOntology(CoolMapOntologyImpl) - Static method in class org.coolmap.core.data.ontology.util.COntologyUtils

printStructure() - Method in class org.coolmap.core.util.bioparser.gseagmt.GmtEntry

printViewMatrix() - Method in class org.coolmap.core.data.CoolMapObject

printViewMatrix(int, int) - Method in class org.coolmap.core.data.CoolMapObject

progressBar - Static variable in class org.coolmap.core.util.graphics.UI

ProgressMask - Class in org.coolmap.core.canvas.ui

ProgressMask() - Constructor for class org.coolmap.core.canvas.ui.ProgressMask

PropertyBasedAggregation<T> - Class in org.coolmap.core.data.aggregator

Created by Keqiang Li on 3/21/16.

PropertyBasedAggregation(CoolMapObject, DataPropertyTable, String) - Constructor for class org.coolmap.core.data.aggregator.PropertyBasedAggregation

PropertyBasedIdToSidePanelDisplayConverterNoOntology<VALUE> - Class in org.coolmap.core.api.aggregation

Created by Keqiang Li on 5/20/16.

PropertyBasedIdToSidePanelDisplayConverterNoOntology(DataPropertyTable<String, String, String>, String, SidePanelValueToColorMapper, String) - Constructor for class org.coolmap.core.api.aggregation.PropertyBasedIdToSidePanelDisplayConverterNoOntology

PropertyBasedIdToSidePanelDisplayConverterUseOntology<VALUE> - Class in org.coolmap.core.api.aggregation

Created by Keqiang Li on 5/20/16.

PropertyBasedIdToSidePanelDisplayConverterUseOntology(DataPropertyTable<String, String, String>, String, ViewDirectionEnum, SidePanelValueAggregator, String) - Constructor for class org.coolmap.core.api.aggregation.PropertyBasedIdToSidePanelDisplayConverterUseOntology

propertyChange(PropertyChangeEvent) - Method in class org.coolmap.core.application.widget.listener.CanvasWidgetPropertyChangedListener

provide() - Method in interface org.coolmap.core.data.ontology.OntologyProvider

pubmedURL - Static variable in class org.coolmap.core.util.BrowserLauncher

put(ROW, PROPERTY, VALUE) - Method in class org.coolmap.core.data.entity.model.DataPropertyTable

put(String, String, T) - Method in class org.coolmap.core.util.TableCache

A B C D E F G H I J L M N O P R S T U V W Z _