- Database - Class in org.coolmap.core.util.bioparser.geosoft
-
- Database(String) - Constructor for class org.coolmap.core.util.bioparser.geosoft.Database
-
- DATABASE - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- DataImportingDialog - Class in org.coolmap.core.application.ui.object
-
Created by Keqiang Li on 6/2/16.
- DataImportingDialog.DataMatrixType - Enum in org.coolmap.core.application.ui.object
-
- DataLevelEnum - Enum in org.coolmap.core.data
-
Created by Keqiang Li on 5/2/16.
- DataMaster - Class in org.coolmap.core.application.utils
-
- DataMatrixTableRowHeader - Class in org.coolmap.core.application.ui.util
-
- DataMatrixTableRowHeader(JTable) - Constructor for class org.coolmap.core.application.ui.util.DataMatrixTableRowHeader
-
- DataProperty<T> - Class in org.coolmap.core.data.entity.sampleProperty.model
-
- DataProperty(String, T) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.DataProperty
-
- DataPropertyGroup<VALUE> - Class in org.coolmap.core.data.entity.sampleProperty.model
-
- DataPropertyGroup(String) - Constructor for class org.coolmap.core.data.entity.sampleProperty.model.DataPropertyGroup
-
- DataPropertyGroupSetting<PROPERTY,VALUE> - Class in org.coolmap.core.data.entity.sampleProperty.model
-
- DataPropertyTable<ROW,PROPERTY,VALUE> - Class in org.coolmap.core.data.entity.model
-
internal data structure for data property
Created by Keqiang Li on 11/18/15.
- DataPropertyTable(String) - Constructor for class org.coolmap.core.data.entity.model.DataPropertyTable
-
- DataPropertyTable.DataPropertyContinuityType - Enum in org.coolmap.core.data.entity.model
-
- dataPropertyTableAdded(DataPropertyTable) - Method in interface org.coolmap.core.application.listeners.DataPropertyTableListener
-
- dataPropertyTableAdded(DataPropertyTable) - Method in class org.coolmap.core.application.ui.ontology.GenerateOntologyFromDataPropertyTablePanel
-
- dataPropertyTableDeleted(DataPropertyTable) - Method in interface org.coolmap.core.application.listeners.DataPropertyTableListener
-
- dataPropertyTableDeleted(DataPropertyTable) - Method in class org.coolmap.core.application.ui.ontology.GenerateOntologyFromDataPropertyTablePanel
-
- DataPropertyTableListener - Interface in org.coolmap.core.application.listeners
-
Created by Keqiang Li on 11/18/15.
- dataPropertyTableRemoved(DataPropertyTable) - Static method in class org.coolmap.core.data.entity.sampleProperty.SamplePropertyMaster
-
- DataRegionEnum - Enum in org.coolmap.core.data
-
Created by Keqiang Li on 5/2/16.
- Dataset - Class in org.coolmap.core.util.bioparser.geosoft
-
- Dataset(String) - Constructor for class org.coolmap.core.util.bioparser.geosoft.Dataset
-
- DATASET - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- dataset_feature_count - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- dataset_sample_count - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- dataset_table_begin - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- dataset_table_end - Static variable in class org.coolmap.core.util.bioparser.geosoft.FieldConstants
-
- DataStorageAdaptor - Class in org.coolmap.core.application.listeners
-
- DataStorageAdaptor() - Constructor for class org.coolmap.core.application.listeners.DataStorageAdaptor
-
- DataStorageListener - Interface in org.coolmap.core.application.listeners
-
- DataTableBackedCoolMapMatrix - Class in org.coolmap.core.data.cmatrix.impl
-
Created by Keqiang Li on 6/24/16.
- DataTableBackedCoolMapMatrix(String) - Constructor for class org.coolmap.core.data.cmatrix.impl.DataTableBackedCoolMapMatrix
-
- DEFAULT_LEGEND_HEIGHT - Static variable in class org.coolmap.core.canvas.renderer.model.ViewRenderer
-
- DEFAULT_LEGEND_WIDTH - Static variable in class org.coolmap.core.canvas.renderer.model.ViewRenderer
-
- DefaultCoolMapMatrixExporter - Class in org.coolmap.core.application.io.internal.cmatrix
-
Export a CoolMapMatrix using embedded object's toString method
- DefaultCoolMapMatrixExporter() - Constructor for class org.coolmap.core.application.io.internal.cmatrix.DefaultCoolMapMatrixExporter
-
- DefaultDataPropertyTableExporter - Class in org.coolmap.core.application.io.internal.dataProperty
-
Created by Keqiang Li on 5/5/16.
- DefaultDataPropertyTableExporter() - Constructor for class org.coolmap.core.application.io.internal.dataProperty.DefaultDataPropertyTableExporter
-
- DefaultDataPropertyTableImporter - Class in org.coolmap.core.application.io.internal.dataProperty
-
Created by Keqiang Li on 5/5/16.
- DefaultDataPropertyTableImporter() - Constructor for class org.coolmap.core.application.io.internal.dataProperty.DefaultDataPropertyTableImporter
-
- DefaultIdToSidePanelDisplayConverterNoOntology<VALUE> - Class in org.coolmap.core.api.aggregation
-
Created by Keqiang Li on 5/26/16.
- DefaultIdToSidePanelDisplayConverterNoOntology(Map<String, VALUE>, SidePanelValueToColorMapper<VALUE>, String) - Constructor for class org.coolmap.core.api.aggregation.DefaultIdToSidePanelDisplayConverterNoOntology
-
- DefaultIdToSidePanelDisplayConverterUseOntology<VALUE> - Class in org.coolmap.core.api.aggregation
-
Created by Keqiang Li on 5/26/16.
- DefaultIdToSidePanelDisplayConverterUseOntology(Map<String, VALUE>, ViewDirectionEnum, SidePanelValueAggregator, String) - Constructor for class org.coolmap.core.api.aggregation.DefaultIdToSidePanelDisplayConverterUseOntology
-
- deleteActiveColNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- deleteActiveRowNodes(HashSet<VNode>) - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- deleteActiveViewNodesCol(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
-
- deleteActiveViewNodesRow(List<VNode>) - Method in class org.coolmap.core.data.CoolMapObject
-
- DeleteStateAction - Class in org.coolmap.core.application.state
-
- DeleteStateAction() - Constructor for class org.coolmap.core.application.state.DeleteStateAction
-
- DelimitedFilePreviewPanel - Class in org.coolmap.core.application.ui.util
-
Created by Keqiang Li on 4/19/16.
- DelimitedFilePreviewPanel(Window) - Constructor for class org.coolmap.core.application.ui.util.DelimitedFilePreviewPanel
-
- density - Variable in class org.coolmap.core.util.network.Edge
-
Edge density = weight / (startNode.weight*endNode.weight).
- destroy() - Method in class org.coolmap.core.application.state.StateQueue
-
- destroy() - Method in class org.coolmap.core.application.utils.TaskEngine
-
- destroy() - Method in class org.coolmap.core.canvas.CoolMapView
-
- destroy() - Method in interface org.coolmap.core.canvas.ui.sidemaps.SideMap
-
- destroy() - Method in class org.coolmap.core.data.cmatrixview.model.VMatrix
-
- destroy() - Method in class org.coolmap.core.data.CoolMapObject
-
- destroy() - Method in class org.coolmap.core.data.ontology.model.CoolMapOntologyImpl
-
- destroy() - Method in class org.coolmap.core.util.filter.ViewFilter
-
- destroyCMatrices(Collection<CoolMapMatrix>) - Static method in class org.coolmap.core.application.CoolMapMaster
-
- destroyCoolMapObject(CoolMapObject) - Static method in class org.coolmap.core.application.CoolMapMaster
-
- destroyCoolMapView(CoolMapObject) - Static method in class org.coolmap.core.application.CoolMapMaster
-
- deSyncAll() - Method in class org.coolmap.core.canvas.CoolMapView
-
deSync
- DFSFindRootNodesContainingNameNumber(List<VNode>, Set<String>, Map<VNode, Set<String>>) - Static method in class org.coolmap.core.canvas.ui.sidemaps.util.SideTreeUtil
-
to find names in activeNodes and put [node:names this node contains]
pairs in containingNodes
- DIR_CMATRIX - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_CONTOLOGY - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_CONTOLOGY_ATTRIBUTE - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_COOLMAPOBJECT - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_DATA_PROPERTY_TABLE - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_PLUGIN - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_STATE - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_StateSnapshot - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIR_WIDGET - Static variable in class org.coolmap.core.application.io.IOTerm
-
- DIRECTION_COLUMN - Static variable in class org.coolmap.core.util.MatrixUtils
-
- DIRECTION_ROW - Static variable in class org.coolmap.core.util.MatrixUtils
-
- disablePropertyBasedAggregation() - Method in class org.coolmap.core.canvas.CoolMapView
-
- distanceInclusive(VNode, VNode, float) - Static method in class org.coolmap.core.data.cmatrixview.model.VNode
-
distance in pixels, including the width of both nodes however, the zoom
parameter only returns the - we don't know the viewOffset @ which the
nodes are actually set so if use a zoom different than the zoom when the
nodes are set, tehre
- doAggregation(String, List<VALUE>) - Method in class org.coolmap.core.api.aggregation.AbstractSidePanelValueAggregator
-
- doAggregation(String, List<String>) - Method in class org.coolmap.core.api.aggregation.SidePanelCategoricalValueAggregator
-
- doAggregation(String, List<Double>) - Method in class org.coolmap.core.api.aggregation.SidePanelContinuousValueAggregator
-
- doAggregation(LinkedHashMap<String, List<Double>>) - Method in class org.coolmap.core.data.aggregator.ColumnPropertyBasedDoubleAggregation
-
- doAggregation(LinkedHashMap<String, List<T>>) - Method in class org.coolmap.core.data.aggregator.RowPropertyBasedAggregation
-
- doAggregation(LinkedHashMap<String, List<Double>>) - Method in class org.coolmap.core.data.aggregator.RowPropertyBasedDoubleAggregation
-
- doImporting(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.io.internal.contology.GMTFormatCoolMapOntologyImporter
-
- doImporting(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.io.internal.contology.OWLOrOBOFormatCoolMapOntologyImporter
-
- doImporting(CoolMapOntologyImpl) - Method in class org.coolmap.core.application.io.internal.contology.SimpleTwoColumnFormatCoolMapOntologyImporter
-
- doImporting(CoolMapOntologyImpl) - Method in class org.coolmap.core.data.ontology.AbstractFileCoolMapOntologyImporter
-
- DoubleCoolMapMatrix - Class in org.coolmap.core.data.cmatrix.impl
-
- DoubleCoolMapMatrix(String, int, int) - Constructor for class org.coolmap.core.data.cmatrix.impl.DoubleCoolMapMatrix
-
- DoubleCoolMapMatrix(String, int, int, String) - Constructor for class org.coolmap.core.data.cmatrix.impl.DoubleCoolMapMatrix
-
- DoubleCoolMapMatrixImporter - Class in org.coolmap.core.application.io.internal.cmatrix
-
- DoubleCoolMapMatrixImporter(TFile, JSONObject) - Constructor for class org.coolmap.core.application.io.internal.cmatrix.DoubleCoolMapMatrixImporter
-
- DoubleDoubleMax - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleMax() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleMax
-
- DoubleDoubleMean - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleMean() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleMean
-
- DoubleDoubleMedian - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleMedian() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleMedian
-
- DoubleDoubleMin - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleMin() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleMin
-
- DoubleDoubleSD - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleSD() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleSD
-
- DoubleDoubleSum - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleSum() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleSum
-
- DoubleDoubleVariance - Class in org.coolmap.core.data.aggregator.impl
-
- DoubleDoubleVariance() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleDoubleVariance
-
- DoubleSnippet1_3 - Class in org.coolmap.core.data.snippet
-
- DoubleSnippet1_3() - Constructor for class org.coolmap.core.data.snippet.DoubleSnippet1_3
-
- DoubleToNetwork - Class in org.coolmap.core.data.aggregator.impl
-
it's some difficulty here
- DoubleToNetwork() - Constructor for class org.coolmap.core.data.aggregator.impl.DoubleToNetwork
-
- doWork() - Method in class org.coolmap.core.canvas.action.ExportCoolMapViewDataAction
-
- drawerContainerHandleHeight - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
-
- drawerContainerHandleWidth - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
-
- DrawerHandle(SideMap, int) - Constructor for class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
-
- drawerHandles - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
-
- drawerHandleSize - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer
-
- drawerSize - Variable in class org.coolmap.core.canvas.ui.sidemaps.SideMapDrawer.DrawerHandle
-
- drawNetwork(int, int) - Method in class org.coolmap.core.util.network.LNetwork
-
- dumpData(CoolMapMatrix, TFile) - Method in class org.coolmap.core.application.io.internal.cmatrix.DefaultCoolMapMatrixExporter
-
- dumpData(CoolMapMatrix, TFile) - Method in interface org.coolmap.core.application.io.internal.cmatrix.interfaces.InternalCoolMapMatrixExporter
-
- dumpData(BufferedWriter, CoolMapOntologyImpl) - Static method in class org.coolmap.core.application.io.internal.contology.InternalCoolMapOntologyIO
-
- dumpData(CoolMapObject, TFile) - Static method in class org.coolmap.core.application.io.internal.coolmapobject.InternalCoolMapObjectIO
-
- dumpData(DataPropertyTable<String, String, String>, TFile) - Method in class org.coolmap.core.application.io.internal.dataProperty.DefaultDataPropertyTableExporter
-
- dumpData(DataPropertyTable<String, String, String>, TFile) - Method in interface org.coolmap.core.application.io.internal.dataProperty.InternalDataPropertyTableExporter
-
- duplicate() - Method in class org.coolmap.core.canvas.ui.MatrixCell
-
- duplicate(boolean) - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- duplicate() - Method in class org.coolmap.core.data.cmatrixview.model.VNode
-
- duplicate() - Method in class org.coolmap.core.data.state.CoolMapState
-
- DynamicResizedCardLayout - Class in org.coolmap.core.application.ui.util
-
Created by Keqiang Li on 4/12/16.
- DynamicResizedCardLayout() - Constructor for class org.coolmap.core.application.ui.util.DynamicResizedCardLayout
-